Gm30719 (predicted gene, 30719) - Rat Genome Database

Name: Gm30719
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm30719 (predicted gene, 30719) Mus musculus

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Symbol:

Gm30719

Name:

predicted gene, 30719

RGD ID:

9662462

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	9,507,279 - 9,508,295 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm38	1	9,437,054 - 9,438,070 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	1	9,411,707 - 9,412,730 (+)	NCBI		Celera
Cytogenetic Map	1	A2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1301275	Sle10_m	systematic lupus erythematosus susceptibility 10 (mouse)			Not determined		1	2882194	36882352	Mouse
15092046	Wngrme1_m	week nine growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
1301370	Adip1_m	adiposity 1 (mouse)			Not determined		1	2882194	36882352	Mouse
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
15092044	Wtgrme1_m	week ten growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
1301471	Obq2_m	obesity QTL 2 (mouse)			Not determined		1	3941620	37941887	Mouse
1301891	Alcp25_m	alcohol preference locus 25 (mouse)			Not determined		1	1	25203185	Mouse
1300834	Cia20_m	collagen induced arthritis 20 (mouse)			Not determined		1	1	25203185	Mouse
15092055	Lgrme1_m	late growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092050	Wsegrme1_m	week seven growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092051	Wegrme1_m	week eight growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
15092048	Wsigrme1_m	week six growth rate, maternal effect 1 (mouse)					1	3280142	37782236	Mouse
1301482	Morph1_m	morphine antinociception 1 (mouse)			Not determined		1	1	30367747	Mouse
10043970	Obq23_m	obesity QTL 23 (mouse)			Not determined		1	5012665	39012665	Mouse
10412226	Alpq4_m	alcohol preference QTL 4 (mouse)			Not determined		1	1	22976684	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_373204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_373205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_373204

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	9,507,279 - 9,508,295 (+)	NCBI
GRCm38	1	9,437,054 - 9,438,070 (+)	NCBI

Sequence:

show sequence

CTGACATGTAATCTTTCTGTTAATGAATCAATCCTGTGCCTTTTGTCAAAATTCCTTGTACTCC
CAACCTTTTGCTTCTTTAAAAGCCCCTAGCCTCCGAGTCTCGTGGTCGACTCCCCTGCCTCCTG
CGTGAGAGTCCAGATATTTGGACAGAAAGAAAGTGAGATCTGACAGGATTGTAGATCCAGTCTC
TGGGACAGAGAAGACACCTAATATTCTTCTGGTTTTGTTGTATTTGTGTTTTCAAGCTTTGTCA
CAGATTGGAATCAAACTAAGCACAGCCAAACTGCCCCTGAGCTCCATCCAATATTTTCAGGATT
GCTGTGAGGAAGGATGCCTTTTTCCAAGTTGTGCTATCTCCCAGCGGTCTCCTGTGTCTGACCA
TGGAGCTCTGCCTTGAACCACTCCCCCACCTCAGGAATGGATCATTATGGAAACTCCTGGCATG
CAGACTTCCTCCTGGACAACATGAGCCCACTCTTCTGCTTCCTGCTGCTCTCTGTGCTAGCACA
GCTGGCCTGCACCCACAGTTTCTTATCTCTAAACCTTCCTTGTTTGCTCTGGTTTCCCCATATG
ATCACTGCAGGG

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RefSeq Acc Id:

XR_373205

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	9,507,279 - 9,508,295 (+)	NCBI
GRCm38	1	9,437,054 - 9,438,070 (+)	NCBI

Sequence:

show sequence

CTGACATGTAATCTTTCTGTTAATGAATCAATCCTGTGCCTTTTGTCAAAATTCCTTGTACTCC
CAACCTTTTGCTTCTTTAAAAGCCCCTAGCCTCCGAGTCTCGTGGTCGACTCCCCTGCCTCCTG
CGTGAGAGTCCAGATATTTGGACAGAAAGAAAGTGAGATCTGACAGGATTGTAGATCCAGTCTC
TGGGACAGAGAAGACACCTAATATTCTTCTGGTTTTGGTATGTGAGTGAAGCTTTGTCACAGAT
TGGAATCAAACTAAGCACAGCCAAACTGCCCCTGAGCTCCATCCAATATTTTCAGGATTGCTGT
GAGGAAGGATGCCTTTTTCCAAGTTGTGCTATCTCCCAGCGGTCTCCTGTGTCTGACCATGGAG
CTCTGCCTTGAACCACTCCCCCACCTCAGGAATGGATCATTATGGAAACTCCTGGCATGCAGAC
TTCCTCCTGGACAACATGAGCCCACTCTTCTGCTTCCTGCTGCTCTCTGTGCTAGCACAGCTGG
CCTGCACCCACAGTTTCTTATCTCTAAACCTTCCTTGTTTGCTCTGGTTTCCCCATATGATCAC
TGCAGGG

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Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000135814	ENTREZGENE
Ensembl Transcript	ENSMUST00000332389	ENTREZGENE
MGD	MGI:5589878	ENTREZGENE
NCBI Gene	Gm30719	ENTREZGENE
PhenoGen	Gm30719	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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