Gm27177 (predicted gene 27177) - Rat Genome Database

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Gene: Gm27177 (predicted gene 27177) Mus musculus
Analyze
Symbol: Gm27177
Name: predicted gene 27177
RGD ID: 9656836
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391469,807,056 - 69,877,918 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1469,819,613 - 69,920,735 (-)EnsemblGRCm39 Ensembl
GRCm381469,581,540 - 69,640,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,582,164 - 69,683,286 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:24316575  


Genomics

Variants

.
Variants in Gm27177
1815 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:468
Count of miRNA genes:358
Interacting mature miRNAs:394
Transcripts:ENSMUST00000183339, ENSMUST00000183514, ENSMUST00000184034, ENSMUST00000184491, ENSMUST00000184792
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000183339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,819,613 - 69,877,723 (-)Ensembl
GRCm38.p6 Ensembl1469,582,164 - 69,640,274 (-)Ensembl
Ensembl Acc Id: ENSMUST00000183514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,918,033 - 69,920,735 (-)Ensembl
GRCm38.p6 Ensembl1469,680,584 - 69,683,286 (-)Ensembl
Ensembl Acc Id: ENSMUST00000184034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,820,801 - 69,877,723 (-)Ensembl
GRCm38.p6 Ensembl1469,583,352 - 69,640,274 (-)Ensembl
Ensembl Acc Id: ENSMUST00000184491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,875,118 - 69,882,201 (-)Ensembl
GRCm38.p6 Ensembl1469,637,669 - 69,644,752 (-)Ensembl
Ensembl Acc Id: ENSMUST00000184792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,829,525 - 69,877,723 (-)Ensembl
GRCm38.p6 Ensembl1469,592,076 - 69,640,274 (-)Ensembl
Ensembl Acc Id: ENSMUST00000267924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,829,522 - 69,877,723 (-)Ensembl
Ensembl Acc Id: ENSMUST00000267925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,829,522 - 69,877,690 (-)Ensembl
RefSeq Acc Id: XR_004938681
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,807,056 - 69,877,918 (-)NCBI
Sequence:
RefSeq Acc Id: XR_383549
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,874,670 - 69,877,914 (-)NCBI
GRCm381469,637,221 - 69,640,470 (-)NCBI
Sequence:
RefSeq Acc Id: XR_874767
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,828,840 - 69,877,914 (-)NCBI
GRCm381469,591,398 - 69,640,470 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098975 Ensembl
MGD MGI:5521020 ENTREZGENE
NCBI Gene Gm27177 ENTREZGENE
PhenoGen Gm27177 PhenoGen
RNAcentral URS000075F1DA RNACentral
  URS0000763B4E RNACentral
  URS000076CDB2 RNACentral
  URS000077D2A5 RNACentral
  URS00007826E1 RNACentral