Gm16261 (predicted gene 16261) - Rat Genome Database

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Gene: Gm16261 (predicted gene 16261) Mus musculus
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Symbol: Gm16261
Name: predicted gene 16261
RGD ID: 9645837
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,389,935 - 60,391,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,391,600 - 60,391,804 (+)EnsemblGRCm39 Ensembl
GRCm381460,152,486 - 60,154,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,154,151 - 60,154,355 (+)EnsemblGRCm38mm10GRCm38
Celera1457,940,762 - 57,945,034 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1431.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Gm16261
66 total Variants

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:97
Interacting mature miRNAs:100
Transcripts:ENSMUST00000096813
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse

1 to 10 of 23 rows





RefSeq Transcripts XM_036159024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000096813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,391,600 - 60,391,804 (+)Ensembl
GRCm38.p6 Ensembl1460,154,151 - 60,154,355 (+)Ensembl
RefSeq Acc Id: XM_036159024   ⟹   XP_036014917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391460,389,935 - 60,391,808 (+)NCBI
Sequence:
Protein RefSeqs XP_036014917 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_036014917   ⟸   XM_036159024



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000072068 Ensembl
MGD MGI:3826544 ENTREZGENE
NCBI Gene Gm16261 ENTREZGENE
PhenoGen Gm16261 PhenoGen