Gm28961 (predicted gene 28961) - Rat Genome Database

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Gene: Gm28961 (predicted gene 28961) Mus musculus
Analyze
No known orthologs.
Symbol: Gm28961
Name: predicted gene 28961
RGD ID: 9644658
MGI Page MGI
Description: Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex.
Type: protein-coding
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 EnsemblY57,714,225 - 57,740,460 (+)EnsemblGRCm39 Ensembl
GRCm38Y57,705,680 - 57,731,917 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblY57,705,697 - 57,731,932 (+)EnsemblGRCm38mm10GRCm38


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000190573   ⟹   ENSMUSP00000139697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY57,714,225 - 57,740,460 (+)Ensembl
GRCm38.p6 EnsemblY57,705,697 - 57,731,932 (+)Ensembl
RefSeq Acc Id: XM_006542211   ⟹   XP_006542274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y57,705,680 - 57,731,917 (+)NCBI
RefSeq Acc Id: XM_006542212   ⟹   XP_006542275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y57,705,680 - 57,731,917 (+)NCBI
RefSeq Acc Id: XM_006542213   ⟹   XP_006542276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y57,705,680 - 57,731,917 (+)NCBI
RefSeq Acc Id: XM_006542214   ⟹   XP_006542277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y57,705,680 - 57,731,917 (+)NCBI
RefSeq Acc Id: XM_006542215   ⟹   XP_006542278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y57,705,680 - 57,731,917 (+)NCBI
RefSeq Acc Id: XM_006542216   ⟹   XP_006542279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y57,705,680 - 57,731,917 (+)NCBI
RefSeq Acc Id: XM_006542217   ⟹   XP_006542280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y57,705,680 - 57,731,917 (+)NCBI
RefSeq Acc Id: XM_006542218   ⟹   XP_006542281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y57,705,680 - 57,731,917 (+)NCBI
Protein Sequences
Ensembl Protein ENSMUSP00000139697.2
RefSeq Acc Id: XP_006542277   ⟸   XM_006542214
- Peptide Label: isoform X4
RefSeq Acc Id: XP_006542279   ⟸   XM_006542216
- Peptide Label: isoform X6
RefSeq Acc Id: XP_006542276   ⟸   XM_006542213
- Peptide Label: isoform X3
RefSeq Acc Id: XP_006542280   ⟸   XM_006542217
- Peptide Label: isoform X7
RefSeq Acc Id: XP_006542278   ⟸   XM_006542215
- Peptide Label: isoform X5
RefSeq Acc Id: XP_006542281   ⟸   XM_006542218
- Peptide Label: isoform X8
RefSeq Acc Id: XP_006542274   ⟸   XM_006542211
- Peptide Label: isoform X1
RefSeq Acc Id: XP_006542275   ⟸   XM_006542212
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000139697   ⟸   ENSMUST00000190573
Protein Domains
XLR/SYCP3/FAM9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A087WPA5-F1-model_v2 AlphaFold A0A087WPA5 1-222 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000101399 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000190573.2 UniProtKB/TrEMBL
InterPro Cor1/Xlr/Xmr UniProtKB/TrEMBL
  XLR/SYCP3 UniProtKB/TrEMBL
MGD MGI:5579667 ENTREZGENE
NCBI Gene Gm28961 ENTREZGENE
PANTHER EG546282 PROTEIN-RELATED UniProtKB/TrEMBL
  XLR/SCP3/FAM9 UniProtKB/TrEMBL
Pfam Cor1 UniProtKB/TrEMBL
PhenoGen Gm28961 PhenoGen
UniProt A0A087WPA5_MOUSE UniProtKB/TrEMBL