Gm15553 (predicted gene 15553) - Rat Genome Database

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Gene: Gm15553 (predicted gene 15553) Mus musculus
Analyze
Symbol: Gm15553
Name: predicted gene 15553
RGD ID: 9640738
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391675,543,088 - 75,543,356 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1675,543,095 - 75,543,356 (-)EnsemblGRCm39 Ensembl
GRCm381675,746,200 - 75,746,468 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1675,746,207 - 75,746,468 (-)EnsemblGRCm38mm10GRCm38
Celera1675,965,825 - 75,966,093 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1643.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm15553
11 total Variants

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:75
Interacting mature miRNAs:76
Transcripts:ENSMUST00000118757
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse

1 to 10 of 24 rows





GenBank Nucleotide AC129776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000118757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1675,543,095 - 75,543,356 (-)Ensembl
GRCm38.p6 Ensembl1675,746,207 - 75,746,468 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000080750 Ensembl, ENTREZGENE
MGD MGI:3783002 ENTREZGENE
NCBI Gene Gm15553 ENTREZGENE
PhenoGen Gm15553 PhenoGen