Gm16537 (predicted gene 16537) - Rat Genome Database

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Gene: Gm16537 (predicted gene 16537) Mus musculus
Analyze
Symbol: Gm16537
Name: predicted gene 16537
RGD ID: 9639554
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,613,415 - 99,622,355 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,613,048 - 99,624,226 (-)EnsemblGRCm39 Ensembl
GRCm381599,715,534 - 99,724,474 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,715,543 - 99,724,474 (-)EnsemblGRCm38mm10GRCm38
Celera15101,871,381 - 101,877,967 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Gm16537
341 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:114
Interacting mature miRNAs:117
Transcripts:ENSMUST00000161529
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597884933102896555Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597697881103008427Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000161529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,414 - 99,622,420 (-)Ensembl
GRCm38.p6 Ensembl1599,715,543 - 99,724,474 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,624,226 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,624,226 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,421 - 99,624,226 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,623,393 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,421 - 99,623,337 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,623,311 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,419 - 99,623,303 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,048 - 99,622,441 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,359 - 99,622,398 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,414 - 99,622,435 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311699
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,622,422 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,622,420 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,622,413 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,412 - 99,622,395 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,622,391 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,622,389 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,622,388 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,419 - 99,622,388 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,421 - 99,622,381 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,419 - 99,622,379 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,421 - 99,622,377 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,622,311 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,421 - 99,622,315 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,421 - 99,622,237 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311713
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,622,023 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,614,269 - 99,622,422 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,419 - 99,620,453 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,620,430 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311717
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,616,414 (-)Ensembl
Ensembl Acc Id: ENSMUST00000311718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,613,415 - 99,614,944 (-)Ensembl
RefSeq Acc Id: NR_155353
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,613,415 - 99,622,355 (-)NCBI
GRCm381599,715,534 - 99,724,474 (-)NCBI
Sequence:
Promoters
RGD ID:15094626
Promoter ID:EPDNEWNC_M2539
Type:multiple initiation site
Name:Gm16537_1
Description:predicted gene 16537 [Source:MGI Symbol;Acc:MGI:4414957]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381599,724,496 - 99,724,556EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089671 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000161529 ENTREZGENE
MGD MGI:4414957 ENTREZGENE
NCBI Gene Gm16537 ENTREZGENE
PhenoGen Gm16537 PhenoGen
RNAcentral URS0000D780D2 RNACentral