Gm12040 (predicted gene 12040) - Rat Genome Database

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Gene: Gm12040 (predicted gene 12040) Mus musculus
Analyze
Symbol: Gm12040
Name: predicted gene 12040
RGD ID: 9638195
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,156,401 - 21,157,024 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,156,410 - 21,156,946 (-)EnsemblGRCm39 Ensembl
GRCm381121,206,401 - 21,206,989 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,206,410 - 21,206,946 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A3.1NCBI
cM Map1113.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm12040
12 total Variants

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:62
Interacting mature miRNAs:62
Transcripts:ENSMUST00000118357
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 50 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse

1 to 10 of 50 rows





GenBank Nucleotide AL669979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000118357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1121,156,410 - 21,156,946 (-)Ensembl
GRCm38.p6 Ensembl1121,206,410 - 21,206,946 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000084259 Ensembl
MGD MGI:3651597 ENTREZGENE
NCBI Gene Gm12040 ENTREZGENE
PhenoGen Gm12040 PhenoGen