Mir6935 (microRNA 6935) - Rat Genome Database

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Gene: Mir6935 (microRNA 6935) Mus musculus
Analyze
Symbol: Mir6935
Name: microRNA 6935
RGD ID: 9633576
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm27344; mmu-mir-6935
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,238,176 - 120,238,239 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,238,176 - 120,238,239 (-)EnsemblGRCm39 Ensembl
GRCm3811120,347,350 - 120,347,413 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,347,350 - 120,347,413 (-)EnsemblGRCm38mm10GRCm38
Celera11132,081,915 - 132,081,978 (-)NCBICelera
Cytogenetic Map11E2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
chloroform  (EXP)

References
Additional References at PubMed
PMID:16381832   PMID:22955976  


Genomics

Variants

.
Variants in Mir6935
1 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:35960
Count of gene targets:13294
Count of transcripts:23198
Interacting mature miRNAs:mmu-miR-6935-3p, mmu-miR-6935-5p
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_105900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL669855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000183615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,238,176 - 120,238,239 (-)Ensembl
GRCm38.p6 Ensembl11120,347,350 - 120,347,413 (-)Ensembl
RefSeq Acc Id: NR_105900
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,238,176 - 120,238,239 (-)NCBI
GRCm3811120,347,350 - 120,347,413 (-)NCBI
Celera11132,081,915 - 132,081,978 (-)NCBI
Sequence:
Promoters
RGD ID:8677658
Promoter ID:EPDNEW_M16859
Type:single initiation site
Name:Mir6935_1
Description:Mus musculus microRNA 6935 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811120,347,440 - 120,347,500EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098955 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000183615 ENTREZGENE
MGD MGI:5530726 ENTREZGENE
miRBase MI0022782 ENTREZGENE
NCBI Gene Mir6935 ENTREZGENE
PhenoGen Mir6935 PhenoGen
RNAcentral URS000075B107 RNACentral
  URS000075BE59 RNACentral
  URS000075E3AE RNACentral