Gm26684 (predicted gene, 26684) - Rat Genome Database

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Gene: Gm26684 (predicted gene, 26684) Mus musculus
Analyze
Symbol: Gm26684
Name: predicted gene, 26684
RGD ID: 9620444
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391554,816,344 - 54,834,101 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1554,815,466 - 54,834,615 (+)EnsemblGRCm39 Ensembl
GRCm381554,952,948 - 54,970,705 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1554,952,070 - 54,964,642 (+)EnsemblGRCm38mm10GRCm38
Celera1556,492,442 - 56,504,153 (+)NCBICelera
Cytogenetic Map15D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:27899360  


Genomics

Variants

.
Variants in Gm26684
605 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:46
Interacting mature miRNAs:48
Transcripts:ENSMUST00000181704
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152631178060311880Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15762948155263396Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15722948155263396Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152446257258462805Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660008666371849Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927302256186850Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152631178060311880Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
35673313Ari8_mantibody response to influenza 8, day 15-45, TotalG (mouse)155146339654863396Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4017702272372580Mouse
1300949Lore5_mloss of righting induced by ethanol 5 (mouse)Not determined154001944158022297Mouse
1357661Eae2b_msusceptibility to experimental allergic encephalomyelitis 2b (mouse)Not determined155100469464944308Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152828264662282739Mouse
14928313Manh78_mmandible shape 78 (mouse)152148464155484641Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152828264662282739Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
12859289Criq3_mCitrobacter rodentium infection QTL 3 (mouse)152259376556593765Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2548497859484978Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162631178060311880Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154556339669171849Mouse
1301324Cdif_mcolor difference (mouse)Not determined153597590669976019Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153910039573100593Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
4142160Femwf10_mfemur work to failure 10 (mouse)Not determined2289301456893160Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153400469468004804Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152631178060311880Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152529580659295928Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
26884452Sklq17_mskull length QTL 17, 16 week (mouse)153020014657963396Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000181704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,815,942 - 54,828,047 (+)Ensembl
GRCm38.p6 Ensembl1554,952,948 - 54,964,642 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,815,466 - 54,824,267 (+)Ensembl
GRCm38.p6 Ensembl1554,952,070 - 54,960,871 (+)Ensembl
Ensembl Acc Id: ENSMUST00000244244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,816,338 - 54,834,107 (+)Ensembl
Ensembl Acc Id: ENSMUST00000245474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,815,634 - 54,834,488 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,816,354 - 54,834,372 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,816,354 - 54,834,372 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,816,216 - 54,834,104 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,816,230 - 54,834,104 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,817,478 - 54,834,114 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,817,478 - 54,834,104 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,817,478 - 54,834,101 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293161
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,817,478 - 54,834,101 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,817,478 - 54,834,088 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,816,368 - 54,828,047 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,661 - 54,834,615 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,661 - 54,834,373 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,668 - 54,834,112 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,674 - 54,834,116 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,671 - 54,834,112 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,671 - 54,834,106 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293170
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,674 - 54,834,106 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,680 - 54,834,106 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,691 - 54,834,107 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,686 - 54,834,101 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,691 - 54,834,106 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,699 - 54,834,112 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,691 - 54,834,104 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,705 - 54,834,114 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293178
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,696 - 54,834,104 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,705 - 54,834,104 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,705 - 54,834,101 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,705 - 54,834,091 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,732 - 54,834,101 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,691 - 54,832,560 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,661 - 54,828,728 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,579 - 54,828,255 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,699 - 54,828,048 (+)Ensembl
Ensembl Acc Id: ENSMUST00000293187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,826,699 - 54,828,047 (+)Ensembl
RefSeq Acc Id: NR_155354
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391554,816,344 - 54,834,101 (+)NCBI
GRCm381554,952,948 - 54,970,705 (+)NCBI
Sequence:
Promoters
RGD ID:8683744
Promoter ID:EPDNEW_M19902
Type:single initiation site
Name:Gm26684_1
Description:Mus musculus predicted gene, 26684 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381554,952,965 - 54,953,025EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097286 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000293156 ENTREZGENE
MGD MGI:5477178 ENTREZGENE
NCBI Gene Gm26684 ENTREZGENE
PhenoGen Gm26684 PhenoGen
RNAcentral URS0000D7806C RNACentral