Gm33215 (predicted gene, 33215) - Rat Genome Database

Name: Gm33215
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm33215 (predicted gene, 33215) Mus musculus

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Symbol:

Gm33215

Name:

predicted gene, 33215

RGD ID:

9609458

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	101,541,365 - 101,558,113 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	3	101,634,049 - 101,650,797 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	3	103,846,054 - 103,862,783 (-)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142399	Aec1_m	autoimmune exocrinopathy 1 (mouse)			Not determined			7586174	102690034	Mouse
26884378	Skwq6_m	skull length QTL 6, 10 week (mouse)					3	51907421	102307316	Mouse
1301392	Eae3_m	susceptibility to experimental allergic encephalomyelitis 3 (mouse)			Not determined		3	79548730	113548837	Mouse
1301904	Iba2_m	induction of brown adipocytes 2 (mouse)			Not determined		3	82147043	116147184	Mouse
1300752	Ap6q_m	alcohol preference 6 QTL (mouse)			Not determined		3	100372912	147045722	Mouse
26884382	Bzwq1_m	bi-zygomatic width QTL 1, 5 week (mouse)					3	52207421	137205761	Mouse
11041900	Lmr11a_m	leishmaniasis resistance 11a (mouse)					3	83463991	117464137	Mouse
26884380	Skwq1_m	skull length QTL 1, 5 week (mouse)					3	43954435	101607316	Mouse
14746984	Manh54_m	mandible shape 54 (mouse)					3	85289152	119289152	Mouse
12738440	Twq3_m	testis weight QTL 3 (mouse)					3	87228015	121228015	Mouse
25314313	Syncl1_m	synaptonemal complex length 1 (mouse)					3	67907333	128393649	Mouse
1301272	Cfsw1_m	cystic fibrosis survival to weaning 1 (mouse)			Not determined		3	83882912	117883044	Mouse
11049572	Lmr11c_m	leishmaniasis resistance 11c (mouse)					3	72139967	106140094	Mouse
26884436	Zlq3_m	zygomatic length QTL 3, 10 week (mouse)					3	3265060	142405761	Mouse
11533920	Mvb3_m	modifier of vibrator 3 (mouse)					3	98635284	132635383	Mouse
26884427	Cvht4_m	cranial vault height 4, 10 week (mouse)					3	16054164	109707316	Mouse
10766455	Sle22_m	systematic lupus erythematosus susceptibility 22 (mouse)					3	90376936	124377072	Mouse
14747001	Mancz4_m	mandible centroid size 4 (mouse)					3	90378017	124378017	Mouse
26884419	Bzwq6_m	bi-zygomatic width QTL 6, 10 week (mouse)					3	100607316	137205761	Mouse
1301705	Sles3_m	systemic lupus erythmatosus suppressor 3 (mouse)			Not determined		3	37174862	143353183	Mouse
13207570	Tcq12_m	total cholesterol QTL 12 (mouse)					3	16504164	130163649	Mouse
1357583	Sle18_m	systematic lupus erythematosus susceptibility 18 (mouse)			Not determined		3	87208904	125316236	Mouse
12792984	Modn1_m	modifier of Dstn neovascularization 1 (mouse)					3	98635284	132635383	Mouse
26884422	Cvht7_m	cranial vault height 7, 16 week (mouse)					3	28954149	118893649	Mouse
4142178	Ctrq2_m	C. trachomatis resistance QTL 2 (mouse)			Not determined		3	89139967	137453008	Mouse
1300595	Tmevd2_m	Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)			Not determined		3	75463302	109463549	Mouse
11251721	Ewc3_m	ethanol withdrawal and consumption 3 (mouse)					3	69568554	103568554	Mouse
1300982	Lmr11_m	leishmaniasis resistance 11 (mouse)			Not determined		3	72139967	106140094	Mouse
1301947	Pcfm3_m	periosteal circumference and femur length 3 (mouse)			Not determined		3	81084652	115084797	Mouse
10043955	Wt10q4_m	body weight, 10 weeks, QTL 4 (mouse)			Not determined		3	98624041	132624197	Mouse
4142099	Cq3_m	cholesterol QTL 3 (mouse)			Not determined		3	84888918	118889067	Mouse
11039512	Ltpr3b_m	Leishmania tropica response 3b (mouse)					3	83463991	117464137	Mouse
1302114	Tbs1_m	tuberculosis severity 1 (mouse)			Not determined		3	98924105	132924250	Mouse
27226733	Tibmd6_m	tibia midshaft diameter 6, 16 week (mouse)					3	101307316	149805637	Mouse
27226732	Tibmd3_m	tibia midshaft diameter 3, 10 week (mouse)					3	96607316	147805636	Mouse
8655600	Cia5b_m	collagen induced arthritis QTL 5b (mouse)			Not determined		3	100655184	103744779	Mouse
1301349	Pgia26_m	proteoglycan induced arthritis 26 (mouse)			Not determined		3	92251533	126251650	Mouse
1302052	Etohcta4_m	ethanol conditioned taste aversion 4 (mouse)			Not determined		3	91000105	125008748	Mouse
1302056	Orgwq4_m	organ weight QTL 4 (mouse)			Not determined		3	30067588	147304689	Mouse
11039507	Ltpr3g_m	Leishmania tropica response 3g (mouse)					3	83463991	117464137	Mouse
11039508	Ltpr3f_m	Leishmania tropica response 3f (mouse)					3	83463991	117464137	Mouse
1301422	Sle11_m	systematic lupus erythematosus susceptibility 11 (mouse)			Not determined		3	70208904	104209042	Mouse
11039509	Ltpr3e_m	Leishmania tropica response 3e (mouse)					3	83463991	117464137	Mouse
11039510	Ltpr3d_m	Leishmania tropica response 3d (mouse)					3	83463991	117464137	Mouse
13208566	Bmiq5_m	body mass index QTL 5 (mouse)					3	40954435	115793649	Mouse
11039511	Ltpr3c_m	Leishmania tropica response 3c (mouse)					3	83463991	117464137	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_375915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_375915

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	101,541,365 - 101,558,113 (-)	NCBI
GRCm38	3	101,634,049 - 101,650,797 (-)	NCBI

Sequence:

show sequence

CCTGTGCATGCCTGGTGCCCACAGAGGTCAGAAGAAGACATCAGATTCTCTGGAACTGAAGCTA
AAGATCGTTTTGAGCTGCTGTGTGGACACTGGGAATTGAGCTCGGGTCTGCTGGAGTGTGTTAA
GGCTGAGTGTACAAAAACATATGACTGATTCAGAAAGCCACTAGAAACTGAAGCAGATGTGGAT
GGCCTCTGAATAGTCTGACCCACTGGGGAACAGCTCAAAGCTCCAAGGCATGGATGGCCCAGAG
GAGACTGGGATATAAAGAATTACAGAAAAAATGGAATCCTGCACCATTTGTATGTGAAACAGGA
CAACAAAAGAGCAGTTAGTCTACAGGGATGGAGGAAAATCACACCGGAGACCATCCAAGGGTCT
CCCCATTGGAAAAAGGTCTAGGAATTCAGCATTTGCAAAGATCCAAACTGGAGGTTAATTAGAA
GGATTGGGCTGAGAACTGGAGACTAGACCTTCGTTCTGGACAAAAGGAAAAGGGATAAGGACAG
AGGAAGGTGATGTCTGCCAGCTGCTGCTCCAAATAAAATGCACCTACATTTACAAAGGCCCTGG
AGCTGGTTGCCTAGCAACATCTTTCTACCTCCCCAGTCTGTTCCATCCATCCTGACCCACCACC
ATACATCCACTGAGCTTGATATGCAAGGCCCTTGGGAACCCCCTCACTTTGAAGCTGCATTTAT
GCATCTTTGCCCAATTCATTGGGAAGATGCTTACAGCTTACAACTTGTAGGTAGTCCTGGTAGC
ATAGCATCATGTACCATTCATGACCCTGGGACAAGGCAAAAGAGAGCTGTCCTCCCTGCATGTC
CTTCAGCAATACAGGATAGCTAGTGCTTTGAGAAAGA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:5592374	ENTREZGENE
NCBI Gene	Gm33215	ENTREZGENE
PhenoGen	Gm33215	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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