Gm30725 (predicted gene, 30725) - Rat Genome Database

Name: Gm30725
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm30725 (predicted gene, 30725) Mus musculus

Analyze

Symbol:

Gm30725

Name:

predicted gene, 30725

RGD ID:

9608592

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	190,165,122 - 190,175,000 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	190,106,925 - 190,177,052 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	190,432,925 - 190,442,803 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	190,419,333 - 190,444,855 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	1	197,347,848 - 197,359,744 (-)	NCBI		Celera
Cytogenetic Map	1	H6	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1301202	Yaa4_m	Y-linked autoimmune acceleration 4 (mouse)			Not determined		1	158468817	192468938	Mouse
4141245	Cq2_m	cholesterol QTL 2 (mouse)			Not determined		1	157456299	191456436	Mouse
1300823	Ath9_m	atherosclerosis 9 (mouse)			Not determined		1	160112768	194112883	Mouse
1558802	Skmw6_m	skeletal muscle weight 6 (mouse)			Not determined		1	167954584	195154279	Mouse
1301652	Cpfd2_m	cerebellum pattern fissures (mouse)			Not determined		1	172303451	195154279	Mouse
1300948	Fglu2_m	fasting glucose 2 (mouse)			Not determined		1	157456299	191456436	Mouse
1301339	Hdlq15_m	HDL QTL 15 (mouse)			Not determined		1	165873675	195154279	Mouse
12790987	Tgl5_m	triglyceride 5 (mouse)					1	160097157	194097157	Mouse
1300888	Berr1_m	berghei resistance locus 1 (mouse)			Not determined		1	164143227	190534272	Mouse
11059556	Lmr20b_m	leishmaniasis resistance 20b (mouse)					1	158468817	192468938	Mouse
11059557	Lmr20a_m	leishmaniasis resistance 20a (mouse)					1	158468817	192468938	Mouse
10043863	Swrl5_m	SWR lupus locus 5 (mouse)			Not determined		1	172303451	195154279	Mouse
11059558	Lmr20c_m	leishmaniasis resistance 20c (mouse)					1	158468817	192468938	Mouse
1301596	Elnt_m	escape latencies during navigation task (mouse)			Not determined		1	162145207	194111528	Mouse
11049575	Lmr8b_m	leishmaniasis resistance 8b (mouse)					1	172303451	195154279	Mouse
12790988	Phdlc5_m	plasma HDL cholesterol 5 (mouse)					9	160097157	194097157	Mouse
1301251	Scc3_m	colon tumor susceptibility 3 (mouse)			Not determined		1	168213823	195154279	Mouse
1301632	Bw8q1_m	body weight at 8 weeks QTL 1 (mouse)			Not determined		1	161201261	195154279	Mouse
1302023	Orch4_m	autoimmune orchitis resistance 4 (mouse)			Not determined		1	175211318	195154279	Mouse
4141483	Femwf7_m	femur work to failure 7 (mouse)			Not determined			167462514	195154279	Mouse
12792983	Liq1_m	limb inflammation QTL 1 (mouse)					1	167586086	191225397	Mouse
1300745	Gvhd1_m	graft-versus-host disease 1 (mouse)			Not determined		1	157456299	191456436	Mouse
10402498	Lmr20_m	leishmaniasis resistance 20 (mouse)			Not determined		1	158468817	192468938	Mouse
10412162	Nobq3_m	New Zealand obese QTL 3 (mouse)			Not determined		1	103933405	191225397	Mouse
1302158	Fembrs5_m	femur breaking strength 5 (mouse)			Not determined		1	167462514	195154279	Mouse
1301132	Mors1_m	modifier of obesity related sterility 1 (mouse)			Not determined		1	170379500	195154279	Mouse
1357620	Aaj1_m	anxiety in A/J 1 (mouse)			Not determined		1	180832317	191851043	Mouse
1301431	Pcho1_m	plasma cholesterol 1 (mouse)			Not determined		1	159262573	193262693	Mouse
1300727	Mptp1_m	MPTP sensitivity 1 (mouse)			Not determined		1	171632048	192681050	Mouse
1559024	Zit1_m	zinc induced tolerance 1 (mouse)			Not determined		1	167462514	195154279	Mouse
1357692	Axtq1_m	anxiety QTL 1 (mouse)			Not determined		1	180832317	191851043	Mouse
12880429	V25Dq1_m	vitamin D inactive form serum level QTL 1 (mouse)					1	172632197	195154279	Mouse
1301565	Mnotch_m	modifier of Notch (mouse)			Not determined		1	157456299	191456436	Mouse
12880426	V25Dq2_m	vitamin D inactive form serum level QTL 2 (mouse)					1	172532197	195154279	Mouse
1300732	Melm2_m	melanoma modifier 2 (mouse)			Not determined		1	157456299	191456436	Mouse
1357732	Tbbmd1_m	total body bone mineral density 1 (mouse)			Not determined		1	171983110	195154279	Mouse
1301602	Bslm4_m	basal locomotor activity 4 (mouse)			Not determined		1	157456299	191456436	Mouse
1301216	Cbm1_m	cerebellum weight 1 (mouse)			Not determined		1	157456299	191456436	Mouse
1300842	Sle9_m	systematic lupus erythematosus susceptibility 9 (mouse)			Not determined		1	158468817	192468938	Mouse
11532690	Sluc37_m	susceptibility to lung cancer 37 (mouse)					1	175468817	194111528	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_003948940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003948944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC124613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000195170

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,151,530 - 190,177,052 (-)	Ensembl
GRCm38.p6 Ensembl	1	190,419,333 - 190,444,855 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378816

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,124,108 - 190,175,014 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378817

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,124,108 - 190,175,006 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378818

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,106,925 - 190,124,573 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378819

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,164,841 - 190,176,702 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378820

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,165,272 - 190,176,878 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378821

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,165,272 - 190,176,848 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378822

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,165,272 - 190,175,691 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378823

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,164,839 - 190,175,036 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378824

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,165,106 - 190,175,259 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378825

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,165,122 - 190,172,232 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378826

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,165,214 - 190,172,225 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000378827

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	190,124,113 - 190,130,847 (-)	Ensembl

RefSeq Acc Id:

XR_003948940

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	190,165,122 - 190,172,216 (-)	NCBI

Sequence:

show sequence

GCTAGCCAGCAGAGTGTACACTCAGAAATGTCAGCTGCCCAAGGACAGGTGTAACCAGCTGGAT
TGTTTCTACACACTGGATCAACACTGTAACCAGCTGGATTGTCCAACAATGTAACCAGCTAGAT
TGTTTCTACACACTGAACCAACAATGTAACCAGCTGGCTTGTCCAACAATGTAACCAGCTGGAT
TGCTTCTACACACTGAACCAACAATGTAACCAGCTAGATTGTTTCTACACACTGAACCAACAAT
GTAACCAGCTGGATTGTCCAACAATGTAACCAGCTGGATTGCTTCTACACCCTGGACCAACAAT
GTTGGCATCTGGTTTGTTGCTAAAGCTCTGGACTTGGTTTTTCTTGATTATGTATTTAACACTG
CTATCATCTTACTTTTGAGGTTTTCATCTTAAGATGTTTTCTCTGTAACTAGGTATACACAGTT
CAGCACATTCTAAAACATTTGAACCATTGGGGTTTCAGTCCTTAAA

hide sequence

RefSeq Acc Id:

XR_003948944

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	190,165,122 - 190,175,000 (-)	NCBI

Sequence:

show sequence

GCCTCTGCCTCCCTTTCCTAAGCAATCCCTCCCATACACCTTATGAATGATTCAGGTGCAACCA
CAGCTGCCTGTGTCTGGCTCCAGGTAGCTTCTTGAAAGCAGATCTTCCTTGAGTTGGGAAGTTC
CCCAGACTACGGACAGTTTTCCCTCTAATTAATGTTCCCTTTTCTACTAAGTTGAGAGACGAGG
AGAAAAGGAGACAACTAGAGAGAAGGCGCGGACTGGGATGCATCACCTTGCAGTGTAACCAGCT
GGATTGTTTCTACACACTGGATCAACACTGTAACCAGCTGGATTGTCCAACAATGTAACCAGCT
AGATTGTTTCTACACACTGAACCAACAATGTAACCAGCTGGCTTGTCCAACAATGTAACCAGCT
GGATTGCTTCTACACACTGAACCAACAATGTAACCAGCTAGATTGTTTCTACACACTGAACCAA
CAATGTAACCAGCTGGATTGTCCAACAATGTAACCAGCTGGATTGCTTCTACACCCTGGACCAA
CAATGTTGGCATCTGGTTTGTTGCTAAAGCTCTGGACTTGGTTTTTCTTGATTATGTATTTAAC
ACTGCTATCATCTTACTTTTGAGGTTTTCATCTTAAGATGTTTTCTCTGTAACTAGGTATACAC
AGTTCAGCACATTCTAAAACATTTGAACCATTGGGGTTTCAGTCCTTAAA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000103510	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000378825	ENTREZGENE
MGD	MGI:5589884	ENTREZGENE
NCBI Gene	Gm30725	ENTREZGENE
PhenoGen	Gm30725	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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