Mir7230 (microRNA 7230) - Rat Genome Database

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Gene: Mir7230 (microRNA 7230) Mus musculus
Analyze
Symbol: Mir7230
Name: microRNA 7230
RGD ID: 9600847
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mmu-mir-7230
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,485,456 - 113,485,511 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,485,456 - 113,485,511 (-)EnsemblGRCm39 Ensembl
GRCm385113,337,590 - 113,337,645 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,337,590 - 113,337,645 (-)EnsemblGRCm38mm10GRCm38
Celera5110,459,065 - 110,459,120 (-)NCBICelera
Cytogenetic Map5FNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16381832   PMID:23034410  



.

Predicted Targets
Summary Value
Count of predictions:18198
Count of gene targets:7359
Count of transcripts:11554
Interacting mature miRNAs:mmu-miR-7230-3p, mmu-miR-7230-5p
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 57 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse

1 to 10 of 57 rows





RefSeq Transcripts NR_106089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000195977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,485,456 - 113,485,511 (-)Ensembl
GRCm38.p6 Ensembl5113,337,590 - 113,337,645 (-)Ensembl
RefSeq Acc Id: NR_106089
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,485,456 - 113,485,511 (-)NCBI
GRCm385113,337,590 - 113,337,645 (-)NCBI
Celera5110,459,065 - 110,459,120 (-)NCBI
Sequence:


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000104840 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000195977 ENTREZGENE
MGD MGI:5562766 ENTREZGENE
miRBase MI0023725 ENTREZGENE
NCBI Gene Mir7230 ENTREZGENE
PhenoGen Mir7230 PhenoGen
RNAcentral URS000075A506 RNACentral
  URS000075AD16 RNACentral
  URS000075EB9B RNACentral
1 to 9 of 9 rows