LOC103692127 (homeobox protein Hox-A5) - Rat Genome Database

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Gene: LOC103692127 (homeobox protein Hox-A5) Rattus norvegicus
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Symbol: LOC103692127
Name: homeobox protein Hox-A5
RGD ID: 9419544
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including negative regulation of angiogenesis; positive regulation of macromolecule biosynthetic process; and regulation of myeloid cell differentiation. Predicted to be located in nucleus.
Type: protein-coding
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0482,256,177 - 82,260,583 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera476,192,532 - 76,196,931 (-)NCBICelera
Cytogenetic Map4q24NCBI


References

Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008762946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008762946   ⟹   XP_008761168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0482,256,177 - 82,260,583 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602796   ⟹   XP_017458285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera476,192,532 - 76,196,931 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008761168 (Get FASTA)   NCBI Sequence Viewer  
  XP_017458285 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064639.2
RefSeq Acc Id: XP_008761168   ⟸   XM_008762946
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017458285   ⟸   XM_017602796
- Peptide Label: isoform X2
- Sequence:
Protein Domains
Homeobox

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000047951 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074167.3 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Antp_homeobox UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_antennapedia UniProtKB/TrEMBL
  Homeobox_Antennapedia_CS UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
NCBI Gene LOC103692127 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-A5 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PhenoGen LOC103692127 PhenoGen
PRINTS ANTENNAPEDIA UniProtKB/TrEMBL
  HOMEOBOX UniProtKB/TrEMBL
PROSITE ANTENNAPEDIA UniProtKB/TrEMBL
  HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047951 RatGTEx
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain-like UniProtKB/TrEMBL
UniProt M0R5H2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-25 LOC103692127  homeobox protein Hox-A5      Symbol and Name status set to provisional 70820 PROVISIONAL