HNRNPA1P39 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 39) - Rat Genome Database

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Gene: HNRNPA1P39 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 39) Homo sapiens
Analyze
Symbol: HNRNPA1P39
Name: heterogeneous nuclear ribonucleoprotein A1 pseudogene 39
RGD ID: 7246229
HGNC Page HGNC:48768
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382174,309,619 - 174,311,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2174,310,015 - 174,310,974 (-)EnsemblGRCh38hg38GRCh38
GRCh372175,174,347 - 175,175,751 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362174,882,750 - 174,883,948 (-)NCBINCBI36Build 36hg18NCBI36
Celera2168,788,259 - 168,789,215 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2167,054,798 - 167,056,003 (-)NCBIHuRef
CHM1_12175,180,796 - 175,182,001 (-)NCBICHM1_1
T2T-CHM13v2.02174,798,303 - 174,799,707 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:194
Count of miRNA genes:188
Interacting mature miRNAs:192
Transcripts:ENST00000440547
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
704 1090 1390 1026 2143 686 914 186 773 93 1121 2973 2988 1 1637 323 1002 693 93

Sequence


Ensembl Acc Id: ENST00000440547
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,310,015 - 174,310,974 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HNRNPA1P39 COSMIC
Ensembl Genes ENSG00000237804 Ensembl
GTEx ENSG00000237804 GTEx
HGNC ID HGNC:48768 ENTREZGENE
Human Proteome Map HNRNPA1P39 Human Proteome Map
NCBI Gene HNRNPA1P39 ENTREZGENE