Gm20817 (predicted gene, 20817) - Rat Genome Database

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Gene: Gm20817 (predicted gene, 20817) Mus musculus
Analyze
No known orthologs.
Symbol: Gm20817
Name: predicted gene, 20817
RGD ID: 7182120
MGI Page MGI
Description: Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex.
Type: protein-coding
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 EnsemblY68,817,865 - 68,843,997 (-)EnsemblGRCm39 Ensembl
GRCm38Y68,806,792 - 68,831,297 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblY68,806,596 - 68,832,728 (-)EnsemblGRCm38mm10GRCm38


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000191123   ⟹   ENSMUSP00000140565
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY68,817,865 - 68,843,997 (-)Ensembl
GRCm38.p6 EnsemblY68,806,596 - 68,832,728 (-)Ensembl
RefSeq Acc Id: XM_001473243   ⟹   XP_001473293
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_006542377   ⟹   XP_006542440
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_006542378   ⟹   XP_006542441
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_006542379   ⟹   XP_006542442
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_011251089   ⟹   XP_011249391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38Y68,806,792 - 68,831,297 (-)NCBI
Protein Sequences
Ensembl Protein ENSMUSP00000139793.2
  ENSMUSP00000140477.2
  ENSMUSP00000140565.2
  ENSMUSP00000140668.2
RefSeq Acc Id: XP_001473293   ⟸   XM_001473243
- Peptide Label: isoform 2
RefSeq Acc Id: XP_006542442   ⟸   XM_006542379
RefSeq Acc Id: XP_006542440   ⟸   XM_006542377
RefSeq Acc Id: XP_006542441   ⟸   XM_006542378
RefSeq Acc Id: XP_011249391   ⟸   XM_011251089
Ensembl Acc Id: ENSMUSP00000140565   ⟸   ENSMUST00000191123
Protein Domains
XLR/SYCP3/FAM9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A087WRK3-F1-model_v2 AlphaFold A0A087WRK3 1-222 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100032 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000100708 UniProtKB/TrEMBL
  ENSMUSG00000100726 UniProtKB/TrEMBL
  ENSMUSG00000100972 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000185924.2 UniProtKB/TrEMBL
  ENSMUST00000189238.2 UniProtKB/TrEMBL
  ENSMUST00000189455.2 UniProtKB/TrEMBL
  ENSMUST00000191123.2 UniProtKB/TrEMBL
InterPro Cor1/Xlr/Xmr UniProtKB/TrEMBL
  XLR/SYCP3 UniProtKB/TrEMBL
MGD MGI:5434173 ENTREZGENE
NCBI Gene Gm20817 ENTREZGENE
PANTHER EG546282 PROTEIN-RELATED UniProtKB/TrEMBL
  XLR/SCP3/FAM9 UniProtKB/TrEMBL
Pfam Cor1 UniProtKB/TrEMBL
PhenoGen Gm20817 PhenoGen
UniProt A0A087WRK3_MOUSE UniProtKB/TrEMBL