Gm21451 (predicted gene, 21451) - Rat Genome Database

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Gene: Gm21451 (predicted gene, 21451) Mus musculus
Analyze
No known orthologs.
Symbol: Gm21451
Name: predicted gene, 21451
RGD ID: 7179855
MGI Page MGI
Description:
Type: protein-coding (Ensembl: unprocessed_pseudogene)
RefSeq Status: MODEL
Previously known as: lysyl oxidase homolog 2; lysyl oxidase homolog 2-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391469,627,810 - 69,729,986 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1469,628,303 - 69,717,736 (+)EnsemblGRCm39 Ensembl
GRCm381469,390,417 - 69,477,453 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,390,854 - 69,480,287 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24316575   PMID:37196079  


Genomics

Variants

.
Variants in Gm21451
1977 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:231
Interacting mature miRNAs:275
Transcripts:ENSMUST00000111062
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse

Markers in Region
BB104597  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381469,680,671 - 69,680,773UniSTSGRCm38
GRCm381469,462,396 - 69,462,498UniSTSGRCm38
MGSCv371470,080,478 - 70,080,580UniSTSGRCm37
Celera1467,216,431 - 67,216,533UniSTS
Cytogenetic Map14D2UniSTS
Whitehead/MRC_RH14787.92UniSTS
D14Mit89  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381469,444,227 - 69,444,376UniSTSGRCm38
GRCm381469,662,502 - 69,662,651UniSTSGRCm38
MGSCv371470,062,309 - 70,062,458UniSTSGRCm37
Cytogenetic Map14D2UniSTS
cM Map1432.5UniSTS
Whitehead Genetic1440.4UniSTS
UniSTS:237218  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381469,680,200 - 69,680,420UniSTSGRCm38
GRCm381469,461,925 - 69,462,145UniSTSGRCm38
MGSCv371470,080,007 - 70,080,227UniSTSGRCm37
Celera1467,215,960 - 67,216,180UniSTS
Cytogenetic Map14D2UniSTS
RH124140  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37683,000,163 - 83,000,396UniSTSGRCm37
MGSCv371470,088,888 - 70,090,035UniSTSGRCm37
Celera685,032,756 - 85,032,989UniSTS
Celera1467,224,707 - 67,225,854UniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map14D2UniSTS
cM Map14 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000111062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,628,303 - 69,717,736 (+)Ensembl
GRCm38.p6 Ensembl1469,390,854 - 69,480,287 (+)Ensembl
RefSeq Acc Id: XM_006519892   ⟹   XP_006519955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,627,810 - 69,713,787 (+)NCBI
GRCm381469,390,797 - 69,476,230 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519897   ⟹   XP_006519960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,627,810 - 69,713,049 (+)NCBI
GRCm381469,390,798 - 69,475,220 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248104   ⟹   XP_030103964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,627,810 - 69,714,924 (+)NCBI
GRCm381469,390,798 - 69,477,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159020   ⟹   XP_036014913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,627,810 - 69,713,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159021   ⟹   XP_036014914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,627,810 - 69,713,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159022   ⟹   XP_036014915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,627,810 - 69,729,986 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159023   ⟹   XP_036014916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,627,810 - 69,710,688 (+)NCBI
Sequence:
RefSeq Acc Id: XP_006519955   ⟸   XM_006519892
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006519960   ⟸   XM_006519897
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_030103964   ⟸   XM_030248104
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036014915   ⟸   XM_036159022
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036014913   ⟸   XM_036159020
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036014914   ⟸   XM_036159021
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036014916   ⟸   XM_036159023
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:5434806 AgrOrtholog
Ensembl Genes ENSMUSG00000094526 Ensembl
MGD MGI:5434806 ENTREZGENE
NCBI Gene Gm21451 ENTREZGENE
PhenoGen Gm21451 PhenoGen