EEF1GP3 (eukaryotic translation elongation factor 1 gamma pseudogene 3) - Rat Genome Database

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Gene: EEF1GP3 (eukaryotic translation elongation factor 1 gamma pseudogene 3) Homo sapiens
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Symbol: EEF1GP3
Name: eukaryotic translation elongation factor 1 gamma pseudogene 3
RGD ID: 7174969
HGNC Page HGNC:44558
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: EEF1G  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38340,596,129 - 40,597,519 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl340,596,207 - 40,597,494 (-)EnsemblGRCh38hg38GRCh38
GRCh37340,637,620 - 40,639,010 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36340,612,702 - 40,613,989 (-)NCBINCBI36Build 36hg18NCBI36
Celera340,576,424 - 40,577,821 (-)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef340,682,366 - 40,683,763 (-)NCBIHuRef
CHM1_1340,588,205 - 40,589,602 (-)NCBICHM1_1
T2T-CHM13v2.0340,611,174 - 40,612,564 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:164
Interacting mature miRNAs:169
Transcripts:ENST00000421044
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
693 845 2001 863 1939 480 715 1 128 321 54 1393 2446 2262 3 1467 1 262 863 551 77 1

Sequence


Ensembl Acc Id: ENST00000421044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl340,596,207 - 40,597,494 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC EEF1GP3 COSMIC
Ensembl Genes ENSG00000226845 Ensembl, ENTREZGENE
GTEx ENSG00000226845 GTEx
HGNC ID HGNC:44558 ENTREZGENE
Human Proteome Map EEF1GP3 Human Proteome Map
NCBI Gene EEF1GP3 ENTREZGENE