PGBD4P5 (piggyBac transposable element derived 4 pseudogene 5) - Rat Genome Database

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Gene: PGBD4P5 (piggyBac transposable element derived 4 pseudogene 5) Homo sapiens
Analyze
Symbol: PGBD4P5
Name: piggyBac transposable element derived 4 pseudogene 5
RGD ID: 6769289
HGNC Page HGNC:44070
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: PGBD4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38288,922,108 - 88,922,753 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl288,922,328 - 88,922,753 (-)EnsemblGRCh38hg38GRCh38
GRCh37289,221,624 - 89,222,269 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera287,567,025 - 87,567,602 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef288,140,712 - 88,141,289 (-)NCBIHuRef
CHM1_1289,151,222 - 89,151,867 (-)NCBICHM1_1
T2T-CHM13v2.0288,931,113 - 88,931,758 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:80
Interacting mature miRNAs:80
Transcripts:ENST00000445958
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
15 188 24 28 119 123 98 47 272 5 21 358 258 2 103 15 422 89 42

Sequence


Ensembl Acc Id: ENST00000445958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl288,922,328 - 88,922,753 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PGBD4P5 COSMIC
Ensembl Genes ENSG00000225136 Ensembl
GTEx ENSG00000225136 GTEx
HGNC ID HGNC:44070 ENTREZGENE
Human Proteome Map PGBD4P5 Human Proteome Map
NCBI Gene PGBD4P5 ENTREZGENE