Gm12045 (predicted gene 12045) - Rat Genome Database

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Gene: Gm12045 (predicted gene 12045) Mus musculus
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Symbol: Gm12045
Name: predicted gene 12045
RGD ID: 5146992
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Rab5c  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,441,314 - 21,441,817 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,441,314 - 21,441,886 (+)EnsemblGRCm39 Ensembl
GRCm381121,491,314 - 21,491,817 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,491,314 - 21,491,886 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,391,317 - 21,391,820 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1123,639,577 - 23,640,080 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm12045
12 total Variants

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:107
Interacting mature miRNAs:110
Transcripts:ENSMUST00000122122
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 50 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse

1 to 10 of 50 rows





RefSeq Transcripts NG_020393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL772195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000122122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1121,441,314 - 21,441,886 (+)Ensembl
GRCm38.p6 Ensembl1121,491,314 - 21,491,886 (+)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000082607 Ensembl, ENTREZGENE
MGD MGI:3651842 ENTREZGENE
NCBI Gene 100417555 ENTREZGENE
PhenoGen Gm12045 PhenoGen