Gm17586 (predicted gene, 17586) - Rat Genome Database

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Gene: Gm17586 (predicted gene, 17586) Mus musculus
Analyze
Symbol: Gm17586
Name: predicted gene, 17586
RGD ID: 5145945
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,524,576 - 120,528,928 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,524,284 - 120,525,958 (+)EnsemblGRCm39 Ensembl
GRCm3811120,633,750 - 120,638,102 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv3711120,494,715 - 120,496,439 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera11132,369,118 - 132,370,475 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12520002   PMID:14610273   PMID:18799693  


Genomics

Variants

.
Variants in Gm17586
117 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_106628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000246819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,524,572 - 120,525,957 (+)Ensembl
Ensembl Acc Id: ENSMUST00000246901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,524,522 - 120,525,957 (+)Ensembl
Ensembl Acc Id: ENSMUST00000247218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,524,522 - 120,525,957 (+)Ensembl
Ensembl Acc Id: ENSMUST00000247287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,524,284 - 120,525,958 (+)Ensembl
Ensembl Acc Id: ENSMUST00000311105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,524,532 - 120,525,957 (+)Ensembl
RefSeq Acc Id: XR_106628
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera11132,369,118 - 132,370,475 (+)NCBI
Promoters
RGD ID:15094048
Promoter ID:EPDNEWNC_M1957
Type:multiple initiation site
Name:Gm17586_1
Description:predicted gene, 17586 [Source:MGI Symbol;Acc:MGI:4937220]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811120,633,750 - 120,633,810EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000120999 Ensembl
MGD MGI:4937220 ENTREZGENE
NCBI Gene Gm17586 ENTREZGENE
PhenoGen Gm17586 PhenoGen