Gm16793 (predicted gene, 16793) - Rat Genome Database

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Gene: Gm16793 (predicted gene, 16793) Mus musculus
Analyze
Symbol: Gm16793
Name: predicted gene, 16793
RGD ID: 5145065
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39836,049,657 - 36,056,174 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl836,048,412 - 36,056,942 (-)EnsemblGRCm39 Ensembl
GRCm38835,582,503 - 35,589,020 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl835,582,503 - 35,588,972 (-)EnsemblGRCm38mm10GRCm38
MGSCv37836,645,557 - 36,652,074 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera838,228,039 - 38,234,538 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map821.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm16793
565 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:54
Interacting mature miRNAs:57
Transcripts:ENSMUST00000181322
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301139Lmr10_mleishmaniasis resistance 10 (mouse)Not determined83532109757797633Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
11049577Lmr10b_mleishmaniasis resistance 10b (mouse)83532109757797633Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
11049578Lmr10c_mleishmaniasis resistance 10c (mouse)83532109757797633Mouse
11041902Lmr10a_mleishmaniasis resistance 10a (mouse)83532109757797633Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
10043990Hbnr12_mHeligmosomoides bakeri nematode resistance 12 (mouse)Not determined83327701651290537Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3250657271740637Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8810320142103372Mouse
10043974Obq30_mobesity QTL 30 (mouse)Not determined82658332260583322Mouse
1301196Mnif1_mmacronutrient intake (mouse)Not determined83510993045305872Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81656937350569697Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81550657249506729Mouse
13524525Bodwtq7_mbody wweight QTL 7 (mouse)82824955647027681Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83429039768290537Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83250657271740637Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81945501853455150Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8810320142103372Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81550657249506729Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8798418941984342Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8810320142103372Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81945501853455150Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81832109752321225Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000181322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,195 (-)Ensembl
GRCm38.p6 Ensembl835,582,503 - 35,588,972 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,449 - 36,056,312 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,174 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,186 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,449 - 36,056,195 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,174 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,191 (-)Ensembl
Ensembl Acc Id: ENSMUST00000245890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,656 - 36,056,243 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,048,412 - 36,056,175 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,048,898 - 36,056,429 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,048,754 - 36,056,174 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,942 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,429 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,312 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,190 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,056,128 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,050,520 - 36,056,597 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,050,520 - 36,056,597 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,050,285 - 36,056,150 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,050,520 - 36,056,186 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,662 - 36,055,020 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,049,657 - 36,054,983 (-)Ensembl
Ensembl Acc Id: ENSMUST00000361549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl836,051,583 - 36,056,291 (-)Ensembl
RefSeq Acc Id: NR_040376
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39836,049,657 - 36,056,174 (-)NCBI
GRCm38835,582,503 - 35,589,020 (-)ENTREZGENE
Celera838,228,039 - 38,234,538 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
Promoters
RGD ID:8666889
Promoter ID:EPDNEW_M11476
Type:initiation region
Name:Gm16793_1
Description:Mus musculus predicted gene, 16793 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38835,589,019 - 35,589,079EPDNEW
RGD ID:15093420
Promoter ID:EPDNEWNC_M1331
Type:multiple initiation site
Name:Gm16793_1
Description:predicted gene, 16793 [Source:MGI Symbol;Acc:MGI:4439717]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38835,589,019 - 35,589,079EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097357 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181322 ENTREZGENE
MGD MGI:4439717 ENTREZGENE
NCBI Gene 100504714 ENTREZGENE
PhenoGen Gm16793 PhenoGen
RNAcentral URS000075B434 RNACentral
  URS00025E433E RNACentral
  URS00025E4865 RNACentral
  URS00025E5CD3 RNACentral
  URS00025EAC4E RNACentral
  URS00025ED4D6 RNACentral
  URS00025F1220 RNACentral
  URS00025F4A0D RNACentral
  URS00025F7538 RNACentral