Gm17844 (predicted gene, 17844) - Rat Genome Database

Name: Gm17844
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm17844 (predicted gene, 17844) Mus musculus

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Symbol:

Gm17844

Name:

predicted gene, 17844

RGD ID:

5143731

MGI Page

MGI

Description:

Type:

pseudo (Ensembl: processed_pseudogene)

RefSeq Status:

INFERRED

Related Functional Gene:

Ccng1

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	89,429,730 - 89,430,303 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	89,429,186 - 89,431,028 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	89,632,842 - 89,633,415 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	89,632,298 - 89,634,140 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	89,633,087 - 89,633,660 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	16	89,835,348 - 89,835,921 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	51.44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm17844
28 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302194	Pgia10_m	proteoglycan induced arthritis 10 (mouse)			Not determined		16	68600722	98008968	Mouse
26884376	Skwq4_m	skull length QTL 4, 5 week (mouse)					16	8417864	90896888	Mouse
1302096	Aod1a_m	autoimmune ovarian dysgenesis 1a (mouse)			Not determined		16	35446643	92573008	Mouse
1558740	Bpq9_m	blood pressure QTL 9 (mouse)			Not determined		16	63327336	97327472	Mouse
4141113	Tgq28_m	triglyceride QTL 28 (mouse)			Not determined			62986646	96986646	Mouse
1301364	Lith14_m	lithogenic gene 14 (mouse)			Not determined		16	55661846	89661961	Mouse
4142262	Lmr18_m	leishmaniasis resistance 18 (mouse)			Not determined		16	69127611	98008968	Mouse
11049573	Lmr18b_m	leishmaniasis resistance 18b (mouse)					16	69127611	98008968	Mouse
1301598	Renf2_m	renal failure 2 (mouse)			Not determined		16	70380252	98008968	Mouse
11049574	Lmr18a_m	leishmaniasis resistance 18a (mouse)					16	69127611	98008968	Mouse
11522753	Cocia19_m	cocaine-induced activity, QTL 19 (mouse)					16	69254482	98008968	Mouse
1300928	Etia_m	ethanol induced activation (mouse)			Not determined		16	63313907	97314016	Mouse
1301125	Sluc27_m	susceptibility to lung cancer 27 (mouse)			Not determined		16	61608644	95608764	Mouse
1301032	Tauph_m	tau phosphorylation (mouse)			Not determined		16	69076132	98008968	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_017736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC122381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000232201

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	89,429,186 - 89,431,028 (-)	Ensembl
GRCm38.p6 Ensembl	16	89,632,298 - 89,634,140 (-)	Ensembl

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000116651	Ensembl
MGD	MGI:5010029	ENTREZGENE
NCBI Gene	100415969	ENTREZGENE
PhenoGen	Gm17844	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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