Gm19557 (predicted gene, 19557) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm19557 (predicted gene, 19557) Mus musculus
Analyze
Symbol: Gm19557
Name: predicted gene, 19557
RGD ID: 5136404
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,501,421 - 47,505,017 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,501,421 - 47,505,017 (+)EnsemblGRCm39 Ensembl
GRCm381947,512,982 - 47,516,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,512,982 - 47,516,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv371947,587,472 - 47,591,068 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1948,272,045 - 48,275,642 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1939.65NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



.

.
Variants in Gm19557
175 total Variants

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:99
Interacting mature miRNAs:101
Transcripts:ENSMUST00000182109
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse

1 to 10 of 27 rows





RefSeq Transcripts NR_045322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000182109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1947,501,421 - 47,505,017 (+)Ensembl
GRCm38.p6 Ensembl1947,512,982 - 47,516,578 (+)Ensembl
RefSeq Acc Id: NR_045322
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,501,421 - 47,505,017 (+)NCBI
GRCm381947,512,982 - 47,516,578 (+)ENTREZGENE
Celera1948,272,045 - 48,275,642 (+)ENTREZGENE
cM Map19 ENTREZGENE
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000097990 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000182109 ENTREZGENE
MGD MGI:5011742 ENTREZGENE
NCBI Gene 100503104 ENTREZGENE
PhenoGen Gm19557 PhenoGen
RNAcentral URS000075E45F RNACentral