MIR4787 (microRNA 4787) - Rat Genome Database

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Gene: MIR4787 (microRNA 4787) Homo sapiens
Analyze
Symbol: MIR4787
Name: microRNA 4787
RGD ID: 5134197
HGNC Page HGNC:41653
Description: Located in extracellular vesicle.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-4787
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38350,675,080 - 50,675,163 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl350,675,080 - 50,675,163 (+)EnsemblGRCh38hg38GRCh38
GRCh37350,712,511 - 50,712,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p21.2NCBI
CHM1_1350,664,704 - 50,664,787 (+)NCBICHM1_1
T2T-CHM13v2.0350,705,058 - 50,705,141 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:16381832   PMID:21037258   PMID:21199797   PMID:21558790   PMID:28798470   PMID:33958547  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3p21.31-21.2(chr3:45879883-50749922)x4 copy number gain See cases [RCV000133650] Chr3:45879883..50749922 [GRCh38]
Chr3:45921375..50787353 [GRCh37]
Chr3:45896379..50762357 [NCBI36]
Chr3:3p21.31-21.2		 pathogenic
GRCh38/hg38 3p21.31-14.3(chr3:49461000-55314500)x1 copy number loss See cases [RCV000051511] Chr3:49461000..55314500 [GRCh38]
Chr3:49498433..55348528 [GRCh37]
Chr3:49473437..55323568 [NCBI36]
Chr3:3p21.31-14.3		 pathogenic
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:72256
Count of gene targets:22262
Count of transcripts:56978
Interacting mature miRNAs:hsa-miR-4787-3p, hsa-miR-4787-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
48 173 192 111 697 174 311 22 106 18 349 408 355 41 410 57 250 277 7

Sequence


Ensembl Acc Id: ENST00000607364
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl350,675,080 - 50,675,163 (+)Ensembl
RefSeq Acc Id: NR_039950
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38350,675,080 - 50,675,163 (+)NCBI
GRCh37350,712,511 - 50,712,594 (+)ENTREZGENE
CHM1_1350,664,704 - 50,664,787 (+)NCBI
T2T-CHM13v2.0350,705,058 - 50,705,141 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC MIR4787 COSMIC
Ensembl Genes ENSG00000272543 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000607364 ENTREZGENE
GTEx ENSG00000272543 GTEx
HGNC ID HGNC:41653 ENTREZGENE
Human Proteome Map MIR4787 Human Proteome Map
miRBase MI0017434 ENTREZGENE
NCBI Gene 100616138 ENTREZGENE
RNAcentral URS00002CBC6D RNACentral
  URS0000521832 RNACentral
  URS000075A45B RNACentral