MIR4719 (microRNA 4719) - Rat Genome Database

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Gene: MIR4719 (microRNA 4719) Homo sapiens
Analyze
Symbol: MIR4719
Name: microRNA 4719
RGD ID: 5134175
HGNC Page HGNC:41807
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381676,868,936 - 76,869,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1676,868,936 - 76,869,019 (+)EnsemblGRCh38hg38GRCh38
GRCh371676,902,833 - 76,902,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16q23.1NCBI
HuRef1662,659,347 - 62,659,430 (+)NCBIHuRef
CHM1_11678,314,244 - 78,314,327 (+)NCBICHM1_1
T2T-CHM13v2.01682,925,104 - 82,925,187 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16381832   PMID:21199797  



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1 to 10 of 616 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001143992.2(WRAP53):c.1192C>T (p.Arg398Trp) single nucleotide variant Dyskeratosis congenita, autosomal recessive 3 [RCV000023966]|Hereditary cancer-predisposing syndrome [RCV003445082]|not provided [RCV001269522] Chr17:7702770 [GRCh38]
Chr17:7606088 [GRCh37]
Chr17:17p13.1
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity
NM_001143992.2(WRAP53):c.1126C>T (p.His376Tyr) single nucleotide variant Dyskeratosis congenita, autosomal recessive 3 [RCV000023967] Chr17:7702514 [GRCh38]
Chr17:7605832 [GRCh37]
Chr17:17p13.1
pathogenic
NM_001143992.2(WRAP53):c.1303G>A (p.Gly435Arg) single nucleotide variant Dyskeratosis congenita, autosomal recessive 3 [RCV000034151]|not provided [RCV003556106] Chr17:7703027 [GRCh38]
Chr17:7606345 [GRCh37]
Chr17:17p13.1
pathogenic|uncertain significance
NM_001143992.2(WRAP53):c.492C>A (p.Phe164Leu) single nucleotide variant Dyskeratosis congenita, autosomal recessive 3 [RCV000034152]|not provided [RCV000439983] Chr17:7689284 [GRCh38]
Chr17:7592602 [GRCh37]
Chr17:17p13.1
pathogenic|likely pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:5732977-8038822)x1 copy number loss See cases [RCV000051043] Chr17:5732977..8038822 [GRCh38]
Chr17:5636297..7942140 [GRCh37]
Chr17:5577021..7882865 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
GRCh38/hg38 17p13.1(chr17:6958978-8335684)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052457]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052457]|See cases [RCV000052457] Chr17:6958978..8335684 [GRCh38]
Chr17:6862297..8239002 [GRCh37]
Chr17:6803021..8179727 [NCBI36]
Chr17:17p13.1
pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:6307904-8842949)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053407]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053407]|See cases [RCV000053407] Chr17:6307904..8842949 [GRCh38]
Chr17:6211224..8746266 [GRCh37]
Chr17:6151948..8686991 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
GRCh38/hg38 17p13.1(chr17:7478195-8435524)x1 copy number loss See cases [RCV000053426] Chr17:7478195..8435524 [GRCh38]
Chr17:7381514..8338842 [GRCh37]
Chr17:7322238..8279567 [NCBI36]
Chr17:17p13.1
pathogenic
NM_001143992.2(WRAP53):c.1510T>C (p.Ser504Pro) single nucleotide variant not provided [RCV000087231] Chr17:7703349 [GRCh38]
Chr17:7606667 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_000546.6(TP53):c.-29+4A>C single nucleotide variant not provided [RCV000115714] Chr17:7687373 [GRCh38]
Chr17:7590691 [GRCh37]
Chr17:17p13.1
uncertain significance
1 to 10 of 616 rows

Predicted Targets
Summary Value
Count of predictions:19013
Count of gene targets:7460
Count of transcripts:14448
Interacting mature miRNAs:hsa-miR-4719
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597454946GWAS1551020_Hseropositivity measurement QTL GWAS1551020 (human)9e-18seropositivity measurement167686895076868951Human




adipose tissue
alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
1 1 18 12 20 10 17 11 5 29 19 1 14 1 5 8


RefSeq Transcripts NR_039870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000585233
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1676,868,936 - 76,869,019 (+)Ensembl
RefSeq Acc Id: NR_039870
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381676,868,936 - 76,869,019 (+)NCBI
GRCh371676,902,833 - 76,902,916 (+)ENTREZGENE
HuRef1662,659,347 - 62,659,430 (+)ENTREZGENE
CHM1_11678,314,244 - 78,314,327 (+)NCBI
T2T-CHM13v2.01682,925,104 - 82,925,187 (+)NCBI
Sequence:


1 to 10 of 10 rows
Database
Acc Id
Source(s)
COSMIC MIR4719 COSMIC
Ensembl Genes ENSG00000266426 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000585233 ENTREZGENE
GTEx ENSG00000266426 GTEx
HGNC ID HGNC:41807 ENTREZGENE
Human Proteome Map MIR4719 Human Proteome Map
miRBase MI0017354 ENTREZGENE
NCBI Gene 100616172 ENTREZGENE
RNAcentral URS0000088093 RNACentral
  URS000075E2D2 RNACentral
1 to 10 of 10 rows