ANKRD26P2 (ankyrin repeat domain 26 pseudogene 2) - Rat Genome Database

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Gene: ANKRD26P2 (ankyrin repeat domain 26 pseudogene 2) Homo sapiens
Analyze
Symbol: ANKRD26P2
Name: ankyrin repeat domain 26 pseudogene 2
RGD ID: 5129398
HGNC Page HGNC:39687
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: KIAA1074
Related Functional Gene: ANKRD26  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381338,909,228 - 38,936,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1338,922,727 - 38,936,199 (-)EnsemblGRCh38hg38GRCh38
GRCh371339,483,365 - 39,510,341 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361338,381,465 - 38,408,241 (-)NCBINCBI36Build 36hg18NCBI36
Celera1320,537,488 - 20,564,271 (-)NCBICelera
Cytogenetic Map13q13.3NCBI
HuRef1320,281,973 - 20,308,953 (-)NCBIHuRef
CHM1_11339,451,063 - 39,478,048 (-)NCBICHM1_1
T2T-CHM13v2.01338,125,935 - 38,152,919 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENST00000445530
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407173667GWAS822643_Hchronic lymphocytic leukemia QTL GWAS822643 (human)0.0000005chronic lymphocytic leukemia133892412838924129Human
406938383GWAS587359_Hshoulder impingement syndrome QTL GWAS587359 (human)0.000004shoulder impingement syndrome133892675138926752Human

Markers in Region
D13S1288  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371339,523,295 - 39,523,486UniSTSGRCh37
Build 361338,421,295 - 38,421,486RGDNCBI36
Celera1320,577,313 - 20,577,496RGD
Cytogenetic Map13q13.3UniSTS
HuRef1320,321,903 - 20,322,086UniSTS
Marshfield Genetic Map1333.73RGD
Marshfield Genetic Map1333.73UniSTS
Genethon Genetic Map1336.0UniSTS
deCODE Assembly Map1340.06UniSTS
Stanford-G3 RH Map13901.0UniSTS
GeneMap99-GB4 RH Map13126.96UniSTS
NCBI RH Map13333.9UniSTS
GeneMap99-G3 RH Map13897.0UniSTS
SHGC-150887  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371339,523,290 - 39,523,575UniSTSGRCh37
Build 361338,421,290 - 38,421,575RGDNCBI36
Celera1320,577,308 - 20,577,585RGD
Cytogenetic Map13q13.3UniSTS
SHGC-147683  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371339,517,941 - 39,518,224UniSTSGRCh37
Build 361338,415,941 - 38,416,224RGDNCBI36
Celera1320,571,966 - 20,572,249RGD
Cytogenetic Map13q13.3UniSTS
HuRef1320,316,548 - 20,316,831UniSTS
SHGC-147695  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371339,516,637 - 39,516,966UniSTSGRCh37
Build 361338,414,637 - 38,414,966RGDNCBI36
Celera1320,570,662 - 20,570,991RGD
Cytogenetic Map13q13.3UniSTS
HuRef1320,315,245 - 20,315,574UniSTS
AFMa130xc9  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371339,520,886 - 39,521,049UniSTSGRCh37
Build 361338,418,886 - 38,419,049RGDNCBI36
Celera1320,574,907 - 20,575,068RGD
Cytogenetic Map13q13.3UniSTS
HuRef1320,319,496 - 20,319,657UniSTS
Whitehead-RH Map13120.3UniSTS
SHGC-156230  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371339,516,943 - 39,517,267UniSTSGRCh37
Build 361338,414,943 - 38,415,267RGDNCBI36
Celera1320,570,968 - 20,571,292RGD
Cytogenetic Map13q13.3UniSTS
HuRef1320,315,551 - 20,315,875UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
41 121 229 42 166 159 169 18 134 13 50 457 233 1 232 75 158 148 5

Sequence


Ensembl Acc Id: ENST00000445530
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1338,922,727 - 38,936,199 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ANKRD26P2 COSMIC
Ensembl Genes ENSG00000235550 Ensembl
GTEx ENSG00000235550 GTEx
HGNC ID HGNC:39687 ENTREZGENE
Human Proteome Map ANKRD26P2 Human Proteome Map
NCBI Gene 646929 ENTREZGENE