MIR3914-2 (microRNA 3914-2) - Rat Genome Database

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Gene: MIR3914-2 (microRNA 3914-2) Homo sapiens
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Symbol: MIR3914-2
Name: microRNA 3914-2
RGD ID: 4888771
HGNC Page HGNC:38975
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38771,307,674 - 71,307,768 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl771,307,674 - 71,307,768 (+)EnsemblGRCh38hg38GRCh38
GRCh37770,772,660 - 70,772,754 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q11.22NCBI
HuRef766,943,764 - 66,943,858 (+)NCBIHuRef
CHM1_1770,867,802 - 70,867,896 (+)NCBICHM1_1
T2T-CHM13v2.0772,525,828 - 72,525,922 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2770,106,589 - 70,106,683 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16381832   PMID:20224791   PMID:21199797   PMID:33672174  



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1 to 10 of 12 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7q11.22(chr7:70792749-72444391)x1 copy number loss See cases [RCV000134945] Chr7:70792749..72444391 [GRCh38]
Chr7:70257735..71909376 [GRCh37]
Chr7:69895671..71547312 [NCBI36]
Chr7:7q11.22
pathogenic
GRCh38/hg38 7q11.22-11.23(chr7:71148562-72895414)x1 copy number loss See cases [RCV000138955] Chr7:71148562..72895414 [GRCh38]
Chr7:70613548..72365951 [GRCh37]
Chr7:70251484..72003887 [NCBI36]
Chr7:7q11.22-11.23
uncertain significance
GRCh38/hg38 7q11.21-11.23(chr7:62736364-75432710)x1 copy number loss See cases [RCV000142528] Chr7:62736364..75432710 [GRCh38]
Chr7:62196742..75061986 [GRCh37]
Chr7:61834177..74899922 [NCBI36]
Chr7:7q11.21-11.23
pathogenic
GRCh38/hg38 7q11.22-21.11(chr7:71225344-81735657)x1 copy number loss See cases [RCV000050709] Chr7:71225344..81735657 [GRCh38]
Chr7:70690330..81364973 [GRCh37]
Chr7:70328266..81202909 [NCBI36]
Chr7:7q11.22-21.11
pathogenic
GRCh38/hg38 7q11.22-11.23(chr7:68668307-73710276)x1 copy number loss See cases [RCV000052321] Chr7:68668307..73710276 [GRCh38]
Chr7:68133294..72806397 [GRCh37]
Chr7:67771230..72762542 [NCBI36]
Chr7:7q11.22-11.23
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7q11.21-21.11(chr7:64560824-79186156)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318]|See cases [RCV000052318] Chr7:64560824..79186156 [GRCh38]
Chr7:64021202..78815472 [GRCh37]
Chr7:63658637..78653408 [NCBI36]
Chr7:7q11.21-21.11
pathogenic
GRCh38/hg38 7q11.21-11.23(chr7:62977085-75415352)x3 copy number gain See cases [RCV000142242] Chr7:62977085..75415352 [GRCh38]
Chr7:62437463..75044630 [GRCh37]
Chr7:62074898..74882566 [NCBI36]
Chr7:7q11.21-11.23
pathogenic
GRCh38/hg38 7q11.21-11.22(chr7:64657050-72243063)x1 copy number loss See cases [RCV000050606] Chr7:64657050..72243063 [GRCh38]
Chr7:64117428..71708048 [GRCh37]
Chr7:63754863..71345984 [NCBI36]
Chr7:7q11.21-11.22
pathogenic
1 to 10 of 12 rows

Predicted Targets
Summary Value
Count of predictions:12691
Count of gene targets:6136
Count of transcripts:11030
Interacting mature miRNAs:hsa-miR-3914
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.






RefSeq Transcripts NR_037479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC079398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000637339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl771,307,674 - 71,307,768 (+)Ensembl
RefSeq Acc Id: NR_037479
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38771,307,674 - 71,307,768 (+)NCBI
GRCh37770,772,660 - 70,772,754 (+)ENTREZGENE
HuRef766,943,764 - 66,943,858 (+)ENTREZGENE
CHM1_1770,867,802 - 70,867,896 (+)NCBI
T2T-CHM13v2.0772,525,828 - 72,525,922 (+)NCBI
CRA_TCAGchr7v2770,106,589 - 70,106,683 (+)ENTREZGENE
Sequence:


1 to 10 of 10 rows
Database
Acc Id
Source(s)
COSMIC MIR3914-2 COSMIC
Ensembl Genes ENSG00000283278 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000637339 ENTREZGENE
GTEx ENSG00000283278 GTEx
HGNC ID HGNC:38975 ENTREZGENE
Human Proteome Map MIR3914-2 Human Proteome Map
miRBase MI0016421 ENTREZGENE
NCBI Gene 100500920 ENTREZGENE
RNAcentral URS00005547BA RNACentral
  URS000075A8BD RNACentral
1 to 10 of 10 rows