Mir3471-1 (microRNA 3471-1) - Rat Genome Database

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Gene: Mir3471-1 (microRNA 3471-1) Mus musculus
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Symbol: Mir3471-1
Name: microRNA 3471-1
RGD ID: 4888706
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mmu-mir-3471-1
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39410,845,500 - 10,845,630 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl410,845,500 - 10,845,630 (-)EnsemblGRCm39 Ensembl
GRCm38410,845,500 - 10,845,630 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl410,845,500 - 10,845,630 (-)EnsemblGRCm38mm10GRCm38
Celera410,660,265 - 10,660,395 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map44.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:20215419  


Genomics

Variants

.
Variants in Mir3471-1
4 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412079Sm1_msusceptibility to Schistosoma mansoni infection 1 (mouse)Not determined4122955614Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
11049579Lmr9b_mleishmaniasis resistance 9b (mouse)4120657234Mouse
11049580Lmr9a_mleishmaniasis resistance 9 (mouse)4120657234Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
1301274Lmr9_mleishmaniasis resistance 9 (mouse)Not determined4120657234Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL672160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000175139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl410,845,500 - 10,845,630 (-)Ensembl
GRCm38.p6 Ensembl410,845,500 - 10,845,630 (-)Ensembl
RefSeq Acc Id: NR_037304
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39410,845,500 - 10,845,630 (-)NCBI
GRCm38410,845,500 - 10,845,630 (-)ENTREZGENE
Celera410,660,265 - 10,660,395 (-)ENTREZGENE
cM Map4 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092880 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175139 ENTREZGENE
MGD MGI:4441436 ENTREZGENE
miRBase MI0014699 ENTREZGENE
NCBI Gene 100499521 ENTREZGENE
PhenoGen Mir3471-1 PhenoGen
RNAcentral URS0000326EC7 RNACentral
  URS000075A76F RNACentral