Mir3110 (microRNA 3110) - Rat Genome Database

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Gene: Mir3110 (microRNA 3110) Mus musculus
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Symbol: Mir3110
Name: microRNA 3110
RGD ID: 4888657
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mmu-mir-3110
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X37,299,318 - 37,299,397 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX37,299,318 - 37,299,397 (+)EnsemblGRCm39 Ensembl
GRCm38X38,210,441 - 38,210,520 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX38,210,441 - 38,210,520 (+)EnsemblGRCm38mm10GRCm38
CeleraX25,855,975 - 25,856,054 (+)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX22.47NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:20413612  


Genomics

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:27175
Count of gene targets:11442
Count of transcripts:19787
Interacting mature miRNAs:mmu-miR-3110-3p, mmu-miR-3110-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL512346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000175053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX37,299,318 - 37,299,397 (+)Ensembl
GRCm38.p6 EnsemblX38,210,441 - 38,210,520 (+)Ensembl
RefSeq Acc Id: NR_037297
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X37,299,318 - 37,299,397 (+)NCBI
GRCm38X38,210,441 - 38,210,520 (+)ENTREZGENE
CeleraX25,855,975 - 25,856,054 (+)ENTREZGENE
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092794 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175053 ENTREZGENE
MGD MGI:4834329 ENTREZGENE
miRBase MI0014107 ENTREZGENE
NCBI Gene 100526512 ENTREZGENE
PhenoGen Mir3110 PhenoGen
RNAcentral URS00005B6F9A RNACentral
  URS000075BF85 RNACentral
  URS000075E287 RNACentral