LOC119871594 (lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog) - Rat Genome Database

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Gene: LOC119871594 (lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog) Canis lupus familiaris
Analyze
Symbol: LOC119871594
Name: lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog
RGD ID: 40924468
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); FOUND IN cytoplasm (inferred); early endosome membrane (inferred); endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha460,834,388 - 60,834,935 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0461,560,165 - 61,560,712 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1461,338,473 - 61,339,321 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0461,466,045 - 61,466,592 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0461,984,973 - 61,985,520 (+)NCBIUU_Cfam_GSD_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038474336   ⟹   XP_038330264
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1461,338,473 - 61,339,321 (+)NCBI
RefSeq Acc Id: XM_038501743   ⟹   XP_038357671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha460,834,388 - 60,834,935 (+)NCBI
RefSeq Acc Id: XM_038535464   ⟹   XP_038391392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0461,984,973 - 61,985,520 (+)NCBI
RefSeq Acc Id: XM_038598077   ⟹   XP_038454005
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0461,466,045 - 61,466,592 (+)NCBI
RefSeq Acc Id: XM_038662384   ⟹   XP_038518312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0461,560,165 - 61,560,712 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038330264 (Get FASTA)   NCBI Sequence Viewer  
  XP_038357671 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391392 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454005 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518312 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000036520.2
RefSeq Acc Id: XP_038330264   ⟸   XM_038474336
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038454005   ⟸   XM_038598077
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038518312   ⟸   XM_038662384
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SRM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038357671   ⟸   XM_038501743
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SRM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391392   ⟸   XM_038535464
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SRM7 (UniProtKB/TrEMBL)
Protein Domains
LITAF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018391 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029219.5 UniProtKB/TrEMBL
InterPro LITAF UniProtKB/TrEMBL
  LITAF_fam UniProtKB/TrEMBL
NCBI Gene LOC119871594 ENTREZGENE
PANTHER LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR UniProtKB/TrEMBL
  LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR UniProtKB/TrEMBL
Pfam zf-LITAF-like UniProtKB/TrEMBL
PROSITE LITAF UniProtKB/TrEMBL
SMART LITAF UniProtKB/TrEMBL
UniProt A0A8P0SRM7 ENTREZGENE, UniProtKB/TrEMBL