LOC119872826 (DNA-directed RNA polymerases I, II, and III subunit RPABC4-like) - Rat Genome Database

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Gene: LOC119872826 (DNA-directed RNA polymerases I, II, and III subunit RPABC4-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC119872826
Name: DNA-directed RNA polymerases I, II, and III subunit RPABC4-like
RGD ID: 40922723
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-directed 5'-3' RNA polymerase activity (inferred); metal ion binding (inferred); INVOLVED IN DNA-templated transcription (inferred); transcription by RNA polymerase I (inferred); transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0810,755,303 - 10,755,816 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1810,437,777 - 10,438,290 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,514,750 - 10,515,495 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,798,948 - 10,799,461 (+)NCBIUU_Cfam_GSD_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038482985   ⟹   XP_038338913
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1810,437,777 - 10,438,290 (+)NCBI
RefSeq Acc Id: XM_038544431   ⟹   XP_038400359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0810,798,948 - 10,799,461 (+)NCBI
RefSeq Acc Id: XM_038608548   ⟹   XP_038464476
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0810,514,750 - 10,515,495 (+)NCBI
RefSeq Acc Id: XM_038673359   ⟹   XP_038529287
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0810,755,303 - 10,755,816 (+)NCBI
RefSeq Acc Id: XP_038338913   ⟸   XM_038482985
RefSeq Acc Id: XP_038464476   ⟸   XM_038608548
RefSeq Acc Id: XP_038529287   ⟸   XM_038673359
- UniProtKB: A0A8C0SID7 (UniProtKB/TrEMBL),   A0A8C0LGE9 (UniProtKB/TrEMBL),   A0A8I3NEN5 (UniProtKB/TrEMBL),   A0A8C0KDJ4 (UniProtKB/TrEMBL),   A0A8C0RAP0 (UniProtKB/TrEMBL),   A0A8I3MSU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400359   ⟸   XM_038544431
- UniProtKB: A0A8C0KDJ4 (UniProtKB/TrEMBL),   A0A8C0LGE9 (UniProtKB/TrEMBL),   A0A8C0RAP0 (UniProtKB/TrEMBL),   A0A8C0SID7 (UniProtKB/TrEMBL),   A0A8I3MSU0 (UniProtKB/TrEMBL),   A0A8I3NEN5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00030002013 UniProtKB/TrEMBL
  ENSCAFG00030009097 UniProtKB/TrEMBL
  ENSCAFG00040013727 UniProtKB/TrEMBL
  ENSCAFG00040013969 UniProtKB/TrEMBL
  ENSCAFG00845002350 UniProtKB/TrEMBL
  ENSCAFG00845011772 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030003673.1 UniProtKB/TrEMBL
  ENSCAFT00030016787.1 UniProtKB/TrEMBL
  ENSCAFT00040025337.1 UniProtKB/TrEMBL
  ENSCAFT00040025770.1 UniProtKB/TrEMBL
  ENSCAFT00845004134.1 UniProtKB/TrEMBL
  ENSCAFT00845020897 ENTREZGENE
  ENSCAFT00845020897.1 UniProtKB/TrEMBL
Gene3D-CATH RNA polymerase ii, chain L UniProtKB/TrEMBL
InterPro RNAP_P/RPABC4 UniProtKB/TrEMBL
  RPABC4 UniProtKB/TrEMBL
  RPABC4/Spt4 UniProtKB/TrEMBL
NCBI Gene LOC119872826 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 UniProtKB/TrEMBL
  PTHR12056 UniProtKB/TrEMBL
Pfam DNA_RNApol_7kD UniProtKB/TrEMBL
SMART RPOLCX UniProtKB/TrEMBL
Superfamily-SCOP SSF63393 UniProtKB/TrEMBL
UniProt A0A8C0KDJ4 ENTREZGENE
  A0A8C0LGE9 ENTREZGENE
  A0A8C0RAP0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SID7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MSU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NEN5 ENTREZGENE, UniProtKB/TrEMBL