LOC119872769 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC119872769 (U6 spliceosomal RNA) Canis lupus familiaris
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Symbol: LOC119872769 (Ensembl: U6)
Name: U6 spliceosomal RNA
RGD ID: 40921981
Description: ENCODES an snrna that exhibits U4 snRNA binding (inferred); INVOLVED IN formation of quadruple SL/U4/U5/U6 snRNP (inferred); spliceosomal tri-snRNP complex assembly (inferred); FOUND IN U4/U6 x U5 tri-snRNP complex (inferred); U6 snRNP (inferred)
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha724,707,141 - 24,707,247 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0724,922,785 - 24,922,891 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl724,922,785 - 24,922,891 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1724,844,575 - 24,844,681 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0724,926,384 - 24,926,490 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0725,071,356 - 25,071,462 (-)NCBIUU_Cfam_GSD_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC119872769
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha724,707,141 - 24,707,247 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0724,922,785 - 24,922,891 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl724,922,785 - 24,922,891 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1724,844,575 - 24,844,681 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0724,926,384 - 24,926,490 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0725,071,356 - 25,071,462 (-)NCBIUU_Cfam_GSD_1.0
RNU6-33P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38488,684,848 - 88,684,954 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl488,684,848 - 88,684,954 (-)EnsemblGRCh38hg38GRCh38
GRCh37489,605,999 - 89,606,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q22.1NCBI
HuRef485,357,916 - 85,358,022 (-)NCBIHuRef
CHM1_1489,582,470 - 89,582,576 (-)NCBICHM1_1
T2T-CHM13v2.0492,016,486 - 92,016,592 (-)NCBIT2T-CHM13v2.0
Rnu6-33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8296,771,115 - 96,771,221 (-)NCBIGRCr8
mRatBN7.2294,863,825 - 94,863,931 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl294,863,825 - 94,863,931 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q23NCBI


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845019657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl724,922,785 - 24,922,891 (-)Ensembl
RefSeq Acc Id: XR_005329104
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1724,844,575 - 24,844,681 (-)NCBI
RefSeq Acc Id: XR_005362787
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0725,071,356 - 25,071,462 (-)NCBI
RefSeq Acc Id: XR_005382406
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha724,707,141 - 24,707,247 (-)NCBI
RefSeq Acc Id: XR_005397259
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0724,926,384 - 24,926,490 (-)NCBI
RefSeq Acc Id: XR_005430495
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0724,922,785 - 24,922,891 (-)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845011104 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845019657 ENTREZGENE
NCBI Gene LOC119872769 ENTREZGENE
RNAcentral URS00007198C2 RNACentral