LOC119877863 (U1 small nuclear ribonucleoprotein C) - Rat Genome Database

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Gene: LOC119877863 (U1 small nuclear ribonucleoprotein C) Canis lupus familiaris
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Symbol: LOC119877863
Name: U1 small nuclear ribonucleoprotein C
RGD ID: 40921749
Description: ENCODES a protein that exhibits mRNA binding (inferred); nucleic acid binding (inferred); protein homodimerization activity (inferred); INVOLVED IN mRNA 5'-splice site recognition (inferred); mRNA splicing, via spliceosome (inferred); spliceosomal snRNP assembly (inferred); FOUND IN U1 snRNP (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: not annotated on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
UU_Cfam_GSD_1.03527,901,645 - 27,902,384 (-)NCBIUU_Cfam_GSD_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038583968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAAHUQ010000351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_038583968   ⟹   XP_038439896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03527,901,645 - 27,902,384 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038439896 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030002156.1
RefSeq Acc Id: XP_038439896   ⟸   XM_038583968
- UniProtKB: E2RGI3 (UniProtKB/Swiss-Prot),   A0A8C0JYS6 (UniProtKB/TrEMBL),   A0A8C0LVA1 (UniProtKB/TrEMBL)
Protein Domains
Matrin-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00030001380 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030002424.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Matrin/U1-C_Znf_C2H2 UniProtKB/TrEMBL
  Matrin/U1-like-C_Znf_C2H2 UniProtKB/TrEMBL
  U1-CZ_Znf_C2H2 UniProtKB/TrEMBL
  U1_snRNP-C UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene LOC119877863 ENTREZGENE
PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C UniProtKB/TrEMBL
  U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C UniProtKB/TrEMBL
Pfam zf-U1 UniProtKB/TrEMBL
PROSITE ZF_MATRIN UniProtKB/TrEMBL
SMART ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0A8C0JYS6 ENTREZGENE
  A0A8C0LVA1 ENTREZGENE, UniProtKB/TrEMBL
  E2RGI3 ENTREZGENE