LOC119868531 (heat shock transcription factor, X-linked member 3-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC119868531 (heat shock transcription factor, X-linked member 3-like) Canis lupus familiaris
Analyze
Symbol: LOC119868531
Name: heat shock transcription factor, X-linked member 3-like
RGD ID: 40907188
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH autistic disorder (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0X119,617,901 - 119,619,655 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X116,729,822 - 116,731,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X118,941,201 - 118,942,955 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X119,546,959 - 119,548,690 (+)NCBIUU_Cfam_GSD_1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC119868531
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0X119,617,901 - 119,619,655 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X116,729,822 - 116,731,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X118,941,201 - 118,942,955 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X119,546,959 - 119,548,690 (+)NCBIUU_Cfam_GSD_1.0
HSFX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X149,929,573 - 149,931,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX149,929,573 - 149,931,287 (+)EnsemblGRCh38hg38GRCh38
GRCh37X149,097,791 - 149,099,505 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq28NCBI
HuRefX137,582,626 - 137,585,381 (-)NCBIHuRef
CHM1_1X148,972,115 - 148,974,379 (+)NCBICHM1_1
T2T-CHM13v2.0X148,197,199 - 148,198,913 (+)NCBIT2T-CHM13v2.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038451062   ⟹   XP_038306990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X119,617,901 - 119,619,655 (-)NCBI
RefSeq Acc Id: XM_038524530   ⟹   XP_038380458
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X116,729,822 - 116,731,576 (-)NCBI
RefSeq Acc Id: XM_038588526   ⟹   XP_038444454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X119,546,959 - 119,548,690 (+)NCBI
RefSeq Acc Id: XM_038653021   ⟹   XP_038508949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X118,941,201 - 118,942,955 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038306990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380458 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444454 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508949 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00845030484
  ENSCAFP00845030484.1
RefSeq Acc Id: XP_038380458   ⟸   XM_038524530
RefSeq Acc Id: XP_038508949   ⟸   XM_038653021
RefSeq Acc Id: XP_038306990   ⟸   XM_038451062
- UniProtKB: A0A8I3S5D5 (UniProtKB/TrEMBL),   A0A8C0LJN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444454   ⟸   XM_038588526
- UniProtKB: A0A8C0LJN3 (UniProtKB/TrEMBL)
Protein Domains
HSF-type DNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845022075 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845038925 ENTREZGENE
  ENSCAFT00845038925.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro HSF_DNA-bd UniProtKB/TrEMBL
  HSF_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene LOC119868531 ENTREZGENE
PANTHER HEAT SHOCK TRANSCRIPTION FACTOR, X-LINKED MEMBER 3-RELATED UniProtKB/TrEMBL
  PTHR10015 UniProtKB/TrEMBL
Pfam HSF_DNA-bind UniProtKB/TrEMBL
SMART HSF UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A8C0LJN3 ENTREZGENE
  A0A8I3S5D5 ENTREZGENE, UniProtKB/TrEMBL