LOC131392115 (STARR-seq mESC enhancer starr_47467)

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Gene: LOC131392115 (STARR-seq mESC enhancer starr_47467) Mus musculus

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Symbol:

LOC131392115

Name:

STARR-seq mESC enhancer starr_47467

RGD ID:

401713717

Description:

This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]

Type:

biological-region

RefSeq Status:

REVIEWED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	81,245,270 - 81,247,606 (+)	NCBI	GRCm39	GRCm39	mm39

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:32912294

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4141630	Gct6_m	granulosa cell tumorigenesis 6 (mouse)			Not determined			47179121	129764756	Mouse
13464140	Hdlq108_m	HDL QTL 108 (mouse)					X	57771960	91771960	Mouse
25314311	Syncl3_m	synaptonemal complex length 3 (mouse)					X	51988877	89743606	Mouse
13824980	Ferq1_m	genetic fertility QTL 1 (mouse)					X	54045360	148782996	Mouse
1357500	Mdmsc6_m	modifier of muscularity 6 (mouse)			Not determined		X	75306671	109306758	Mouse
1300794	Spha2_m	sperm head anomaly 2 (mouse)			Not determined		X	39921498	86260137	Mouse
12879918	Shm4_m	sperm head morphology 4 (mouse)					X	72072050	102062720	Mouse
25314318	Sccor2_m	synaptonemal complex length to mean MLH1 count ratio 2 (mouse)					X	70543606	96543606	Mouse
1357433	Dbts2_m	diabetes 2 (mouse)			Not determined		X	7226295	150107038	Mouse
25314316	Mlh1fc3_m	MLH1 foci count 3 (mouse)					X	61343606	89843606	Mouse
10412108	Desp5_m	despair 5 (mouse)			Not determined		X	54722351	88722351	Mouse
1302054	Gct4_m	granulosa cell tumorigenesis 4 (mouse)			Not determined		X	76124336	102062720	Mouse
11075102	Modc2_m	modifier of Odc2 (mouse)					X	80189914	114190059	Mouse
4141665	Mhysq2_m	male hybrid sterility QTL 2 (mouse)			Not determined			71453852	139203212	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_228006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL672034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC131392115	ENTREZGENE
PhenoGen	LOC131392115	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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