D230030E09Rik (Riken cDNA D230030E09 gene)

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Gene: D230030E09Rik (Riken cDNA D230030E09 gene) Mus musculus

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Symbol:

D230030E09Rik

Name:

Riken cDNA D230030E09 gene

RGD ID:

3902693

MGI Page

MGI

Description:

Is expressed in several structures, including chordamesoderm; gut; and node.

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

Gm4155; N; Npe; predicted gene 4155

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	118,482,032 - 118,493,928 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	118,479,410 - 118,548,489 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	118,518,297 - 118,530,193 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	118,518,297 - 118,530,193 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	119,757,101 - 119,768,166 (-)	MERGE	GRCm37	MGSCv37	mm9	NCBIm37
Cytogenetic Map	12	F2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:20153842

Genomics

Variants

Variants in D230030E09Rik
322 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300883	Ath21_m	atherosclerosis 21 (mouse)			Not determined		12	85961579	119961683	Mouse
12910532	Nrq10a_m	noise-induced hearing loss resistant QTL 10a (mouse)					12	92750025	120092757	Mouse
12910533	Nrq10_m	noise-induced hearing loss resistant QTL 10 (mouse)					12	92750025	120092757	Mouse
1357463	Vtbt14_m	vertebral trabecular bone trait 14 (mouse)			Not determined		12	92936097	120092757	Mouse
10402491	Dipa4_m	drug induced psychomotor activation 4 (mouse)			Not determined		12	91222515	120092757	Mouse
1301269	Sluc12_m	susceptibility to lung cancer 12 (mouse)			Not determined		12	96860337	120092757	Mouse
4142007	Chlq17_m	circulating hormone level QTL 17 (mouse)			Not determined		12	88052874	120092757	Mouse
5491194	Mobq3_m	multigenic obesity QTL 3 (mouse)			Not determined		12	89664071	120092757	Mouse
1302138	Im6_m	immunoregulatory 6 (mouse)			Not determined		12	96860337	120092757	Mouse
1301308	Prdt4_m	prion disease incubation time 4 (mouse)			Not determined		12	88308354	120092757	Mouse
1301922	Bbaa6_m	B.burgdorferi-associated arthritis 6 (mouse)			Not determined		12	90308268	120092757	Mouse
1300545	Lifespan3_m	life span 3 (mouse)			Not determined		12	88052874	120092757	Mouse
1302177	Dps2_m	delta power in slow-wave sleep 2 (mouse)			Not determined		12	94146064	120092757	Mouse
15092085	Igly2_m	IgG glycosylation 2, GP14 (mouse)					12	111737297	119992757	Mouse
10412075	Nils1_m	neointima lesion size 1 (mouse)			Not determined		12	102024665	120092757	Mouse
1558957	Igan4_m	IgA nephropathy 4 (mouse)			Not determined		12	109750025	119024949	Mouse
1300973	Abmm_m	antibody mediated myocarditis (mouse)			Not determined		12	93264461	120092757	Mouse
1301836	Heal5_m	wound healing/regeneration 5 (mouse)			Not determined		12	89939031	120092757	Mouse

Markers in Region

D230030E09Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	118,518,378 - 118,518,694	UniSTS	GRCm38
MGSCv37	12	119,756,851 - 119,757,167	UniSTS	GRCm37
cM Map	12		UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC139238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK084355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000222459

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,482,032 - 118,493,928 (-)	Ensembl
GRCm38.p6 Ensembl	12	118,518,297 - 118,530,193 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352738

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,482,011 - 118,548,489 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352739

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,482,030 - 118,547,221 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352740

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,482,033 - 118,528,130 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352741

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,481,445 - 118,504,328 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352742

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,482,030 - 118,504,344 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352743

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,479,410 - 118,493,873 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352744

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,480,933 - 118,493,966 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352745

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,482,033 - 118,494,709 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352746

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,481,815 - 118,494,053 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352747

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,482,030 - 118,493,474 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352748

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	118,482,030 - 118,484,016 (-)	Ensembl

RefSeq Acc Id:

NR_045947

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	118,482,032 - 118,493,928 (-)	NCBI
GRCm38	12	118,518,297 - 118,530,193 (-)	ENTREZGENE
cM Map	12		ENTREZGENE

Sequence:

show sequence

AAGAGGATGGCGAGGAGCCCCGCAGAGAGGGTGCGGGCGCCGGCTACCTGAAGGAGCCTTTGTT
CGGCCCGGGCGCCGAGAGCGCATTCTTTCACACCAGGAACGGCGGGAGAAGACGTTCATTCAGT
CCGCTTTTTTGGTGACGTAGTTGGGGCATTCATGTGTTTTTAACCTTGAATAATTTTTGTCTCT
AAGCTCCAAACAAGCCTTATCCTGTCCACAGGGGCGCAAAGCCCGGCCATGGCCGGTAGCAATC
CACAGCTTATCTAAGAAAAGCAGAGGCGGCCTCTCCCGGGATGGCAGGGTTGGTGGGAATCCAA
CGCTCTTGCTGCCCTGCGCTGCACACCGGAGCTGGGAATCAAATCAGGCTTGGATACAGATGAG
AAGGTGCAGTTCTGTCCCTTGTCGGTGGAAGCAAGGAGATCTATCAAGTCTGGTACAACTGAAG
CTCTGTGCAGTCAGAAAATTTGACTGGACACAATGAAGCCTATCAATCAGCATACACCACAGGA
AGCCGCTGCATCTCTTAGATCCCATCCCAGCTTCCAGGGAGGTAGCTCCAAAGTCTTCATGTCC
TACTGGGCCAGCGCCCTCCATGAGAAGCATATTGGTCCTTTCTTCTTTGCCTCCTGCTGTCCCC
AACCCTACCACCAAGGAGCCTGCTCAAGAAACATGGCCTGATGCTAAAACGAAAGGGAATGGGA
GCCAACTTCCCTGGGTAGACGGTGGAGGGCCCATGTTTCAATTCTGCCTGGCCATTGTAGACAG
GAACTACTTAGTTACCTGAACACAACAGCGATTCCTCCTGTGCAGGACAATCTTTCTGACTAAA
AAGAGAAAAGAAACAGGAAAGGAAGTGAAAAAATAAATCAGAATTATTTCCT

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Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000113875	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000222459	ENTREZGENE
MGD	MGI:4438394	ENTREZGENE
NCBI Gene	100384890	ENTREZGENE
PhenoGen	D230030E09Rik	PhenoGen
RNAcentral	URS000075E989	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-05	D230030E09Rik	Riken cDNA D230030E09 gene	Gm4155	predicted gene 4155	Data merged from RGD:2308014	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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