Gm11405 (predicted gene 11405) - Rat Genome Database

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Gene: Gm11405 (predicted gene 11405) Mus musculus
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Symbol: Gm11405
Name: predicted gene 11405
RGD ID: 2312145
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Zfp384  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39474,146,363 - 74,148,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl474,146,434 - 74,147,989 (+)EnsemblGRCm39 Ensembl
GRCm38474,228,126 - 74,229,949 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl474,228,197 - 74,229,752 (+)EnsemblGRCm38mm10GRCm38
MGSCv37473,874,101 - 73,875,653 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36473,873,060 - 73,875,656 (+)NCBIMGSCv36mm8
Cytogenetic Map4C3NCBI
cM Map436.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:37196079  



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Variants in Gm11405
159 total Variants

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:133
Interacting mature miRNAs:137
Transcripts:ENSMUST00000118689
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 52 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse

1 to 10 of 52 rows





RefSeq Transcripts NG_020570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL844607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000118689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl474,146,434 - 74,147,989 (+)Ensembl
GRCm38.p6 Ensembl474,228,197 - 74,229,752 (+)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000083767 Ensembl, ENTREZGENE
MGD MGI:3651226 ENTREZGENE
NCBI Gene 100039774 ENTREZGENE
PhenoGen Gm11405 PhenoGen