Gm6526 (predicted gene 6526) - Rat Genome Database

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Gene: Gm6526 (predicted gene 6526) Mus musculus
Analyze
No known orthologs.
Symbol: Gm6526
Name: predicted gene 6526
RGD ID: 2312120
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EG624717; uncharacterized protein Gm6526
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391443,985,319 - 43,994,843 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1443,935,281 - 43,993,405 (+)EnsemblGRCm39 Ensembl
GRCm381443,747,862 - 43,754,914 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1443,747,866 - 43,755,948 (+)EnsemblGRCm38mm10GRCm38
MGSCv371444,325,557 - 44,332,646 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361442,627,066 - 42,634,848 (+)NCBIMGSCv36mm8
Celera1438,918,476 - 38,925,565 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1422.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Gm6526
444 total Variants

Predicted Target Of
Summary Value
Count of predictions:330
Count of miRNA genes:275
Interacting mature miRNAs:295
Transcripts:ENSMUST00000100643, ENSMUST00000179860
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse

1 to 10 of 27 rows





RefSeq Transcripts XM_036159006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000100643   ⟹   ENSMUSP00000098208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1443,985,323 - 43,993,405 (+)Ensembl
GRCm38.p6 Ensembl1443,747,866 - 43,755,948 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179860   ⟹   ENSMUSP00000136216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1443,985,340 - 43,988,332 (+)Ensembl
GRCm38.p6 Ensembl1443,747,883 - 43,750,875 (+)Ensembl
Ensembl Acc Id: ENSMUST00000249601   ⟹   ENSMUSP00000159810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1443,935,281 - 43,992,503 (+)Ensembl
Ensembl Acc Id: ENSMUST00000249602   ⟹   ENSMUSP00000159811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1443,985,265 - 43,993,056 (+)Ensembl
RefSeq Acc Id: XM_036159006   ⟹   XP_036014899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391443,985,319 - 43,994,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159007   ⟹   XP_036014900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391443,985,319 - 43,994,843 (+)NCBI
Sequence:
Protein RefSeqs XP_036014899 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014900 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000098208.4
  ENSMUSP00000159810.1
  ENSMUSP00000159811
  ENSMUSP00000159811.1
Ensembl Acc Id: ENSMUSP00000136216   ⟸   ENSMUST00000179860
Ensembl Acc Id: ENSMUSP00000098208   ⟸   ENSMUST00000100643
RefSeq Acc Id: XP_036014900   ⟸   XM_036159007
- Peptide Label: isoform X2
- UniProtKB: G3X9Q9 (UniProtKB/TrEMBL),   K7N6Y5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036014899   ⟸   XM_036159006
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000159810   ⟸   ENSMUST00000249601
Name Modeler Protein Id AA Range Protein Structure
AF-G3X9Q9-F1-model_v2 AlphaFold G3X9Q9 1-198 view protein structure



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000091698 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000100643.10 UniProtKB/TrEMBL
  ENSMUST00000249601.1 UniProtKB/TrEMBL
  ENSMUST00000249602 ENTREZGENE
  ENSMUST00000249602.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
MGD MGI:3648758 ENTREZGENE
NCBI Gene Gm6526 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Gm6526 PhenoGen
UniProt A0AA74KTE9_MOUSE UniProtKB/TrEMBL
  G3X9Q9 ENTREZGENE, UniProtKB/TrEMBL
  K7N6Y5 ENTREZGENE
1 to 15 of 15 rows