Gm11888 (predicted gene 11888) - Rat Genome Database

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Gene: Gm11888 (predicted gene 11888) Mus musculus
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Symbol: Gm11888
Name: predicted gene 11888
RGD ID: 2311969
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Rps2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39423,485,264 - 23,486,019 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl423,484,820 - 23,486,020 (+)EnsemblGRCm39 Ensembl
GRCm38423,485,264 - 23,486,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl423,484,820 - 23,486,020 (+)EnsemblGRCm38mm10GRCm38
MGSCv37423,412,424 - 23,413,167 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36423,572,046 - 23,576,870 (+)NCBIMGSCv36mm8
Celera423,236,657 - 23,237,400 (+)NCBICelera
Cytogenetic Map4A3NCBI
cM Map410.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm11888
74 total Variants

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:57
Interacting mature miRNAs:58
Transcripts:ENSMUST00000120471
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse

1 to 10 of 24 rows





RefSeq Transcripts NG_020545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL772326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000120471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl423,484,820 - 23,486,020 (+)Ensembl
GRCm38.p6 Ensembl423,484,820 - 23,486,020 (+)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000083785 Ensembl
MGD MGI:3651111 ENTREZGENE
NCBI Gene 625462 ENTREZGENE
PhenoGen Gm11888 PhenoGen