4931440P22Rik (RIKEN cDNA 4931440P22 gene)

Advanced Search (OLGA)

Gene: 4931440P22Rik (RIKEN cDNA 4931440P22 gene) Mus musculus

Analyze

Symbol:

4931440P22Rik (Ensembl: Gm38503)

Name:

RIKEN cDNA 4931440P22 gene (Ensembl:predicted gene, 38503)

RGD ID:

2311275

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

PREDICTED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	65,434,904 - 65,436,835 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	65,416,112 - 65,416,585 (-)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	3	65,385,649 - 65,436,919 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	65,527,483 - 65,529,414 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	65,507,257 - 65,529,379 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	65,331,405 - 65,333,336 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	65,615,452 - 65,617,308 (-)	NCBI		MGSCv36	mm8
Celera	3	65,662,679 - 65,664,613 (-)	NCBI		Celera
Cytogenetic Map	3	E1	NCBI
cM Map	3	30.19	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073	PMID:18799693

Genomics

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	610
Count of miRNA genes:	395
Interacting mature miRNAs:	450
Transcripts:	ENSMUST00000099076, ENSMUST00000147424, ENSMUST00000184377
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142399	Aec1_m	autoimmune exocrinopathy 1 (mouse)			Not determined			7586174	102690034	Mouse
14746977	Manh53_m	mandible shape 53 (mouse)					3	35925280	69925280	Mouse
26884378	Skwq6_m	skull length QTL 6, 10 week (mouse)					3	51907421	102307316	Mouse
15039332	Nmrs6_m	NAFLD-associated magnetic resonance shift 6 (mouse)					3	34170741	68170741	Mouse
1301585	Cd4ts1_m	CD4 T cell subset 1 (mouse)			Not determined		3	39704102	73704231	Mouse
4141116	Lgaq4_m	late growth adjusted QTL 4 (mouse)			Not determined			10249221	83184946	Mouse
4141563	Lgq3_m	late growth QTL 3 (mouse)			Not determined			10249221	83184946	Mouse
1357584	Splq6_m	spleen weight QTL 6 (mouse)			Not determined		3	10249221	83184946	Mouse
26884382	Bzwq1_m	bi-zygomatic width QTL 1, 5 week (mouse)					3	52207421	137205761	Mouse
11041901	Lmr11b_m	leishmaniasis resistance 11b (mouse)					3	39704102	73704231	Mouse
1357585	Manln3_m	mandible length 3 (mouse)			Not determined		3	52625509	86625745	Mouse
26884380	Skwq1_m	skull length QTL 1, 5 week (mouse)					3	43954435	101607316	Mouse
13464139	Nhdlq17_m	non-HDL QTL 17 (mouse)					3	52923183	86923183	Mouse
1300895	Hdl5_m	HDL level 5 (mouse)			Not determined		3	49495005	83495118	Mouse
15039336	Nmrs2_m	NAFLD-associated magnetic resonance shift 2 (mouse)					3	34576103	68576103	Mouse
26884436	Zlq3_m	zygomatic length QTL 3, 10 week (mouse)					3	3265060	142405761	Mouse
1301917	Tshp4_m	tooth shape 4 (mouse)			Not determined		3	52625509	86625745	Mouse
26884427	Cvht4_m	cranial vault height 4, 10 week (mouse)					3	16054164	109707316	Mouse
4141294	Bmd24_m	bone mineral density 24 (mouse)			Not determined		3	61740061	95740241	Mouse
1301824	Susp_m	suppressor of superoxide production (mouse)			Not determined		3	49495005	83495118	Mouse
1357440	Hrtpq1_m	heart weight percentage QTL 1 (mouse)			Not determined		3	10249221	83184946	Mouse
10755516	Amzn1_m	anatomical modifier of Zfp423 1 (mouse)					3	39704102	73704231	Mouse
1558925	Hivan1_m	HIV-associated nephropathy 1 (mouse)			Not determined		3	7586174	68716946	Mouse
9587784	Afw13_m	abdominal fat weight QTL 13 (mouse)			Not determined		3	33752045	67752228	Mouse
1301705	Sles3_m	systemic lupus erythmatosus suppressor 3 (mouse)			Not determined		3	37174862	143353183	Mouse
39128206	Lwq18_m	liver weight QTL 18 (mouse)					3	10249221	83184946	Mouse
13207570	Tcq12_m	total cholesterol QTL 12 (mouse)					3	16504164	130163649	Mouse
26884422	Cvht7_m	cranial vault height 7, 16 week (mouse)					3	28954149	118893649	Mouse
1300593	Skull4_m	skull morphology 4 (mouse)			Not determined		3	52625509	86625745	Mouse
12880419	V125Dq4_m	vitamin D active form serum level QTL 4 (mouse)					3	58907307	92907307	Mouse
4141079	Ath23_m	atherosclerosis 23 (mouse)			Not determined			49357581	83357581	Mouse
18337272	Bmd46_m	bone mineral density 46, males (mouse)					3	35407421	69407421	Mouse
11039513	Ltpr3a_m	Leishmania tropica response 3a (mouse)					3	39704102	73704231	Mouse
1300961	Bh4p_m	bar holding four paws (mouse)			Not determined		3	31837854	65837997	Mouse
10043882	Bwtq13_m	body weight QTL 13 (mouse)			Not determined		3	33752045	67752228	Mouse
10412073	Ssen2_m	suseptibility to Sendai virus 2 (mouse)			Not determined		3	33535465	67535615	Mouse
11039519	Ltpr3_m	Leishmania tropica response 3 (mouse)					3	56704102	100464137	Mouse
4141255	W10q3_m	weight 10 weeks QTL 3 (mouse)			Not determined			10249221	83184946	Mouse
1300587	Aod2_m	autoimmune ovarian dysgenesis 2 (mouse)			Not determined		3	37179742	68716946	Mouse
1302056	Orgwq4_m	organ weight QTL 4 (mouse)			Not determined		3	30067588	147304689	Mouse
13208566	Bmiq5_m	body mass index QTL 5 (mouse)					3	40954435	115793649	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_027955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK016513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK136269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK161073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK170145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK171113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000099076

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,434,944 - 65,436,800 (-)	Ensembl
GRCm38.p6 Ensembl	3	65,527,523 - 65,529,379 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000147424

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,414,678 - 65,435,646 (-)	Ensembl
GRCm38.p6 Ensembl	3	65,507,257 - 65,528,184 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000184377

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,422,746 - 65,436,792 (-)	Ensembl
GRCm38.p6 Ensembl	3	65,515,325 - 65,529,371 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000193051

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,434,910 - 65,436,634 (-)	Ensembl
GRCm38.p6 Ensembl	3	65,527,489 - 65,529,213 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000194448

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,416,112 - 65,416,585 (-)	Ensembl
GRCm38.p6 Ensembl	3	65,508,691 - 65,509,164 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343615

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,101 - 65,436,716 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343616

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,105 - 65,427,645 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343617

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,212 - 65,427,616 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343618

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,437 - 65,436,820 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343619

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,439 - 65,436,800 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343620

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,439 - 65,436,791 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343621

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,437 - 65,436,739 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343622

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,437 - 65,436,711 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343623

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,402,185 - 65,436,804 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343624

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,407,083 - 65,436,711 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343625

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,407,420 - 65,436,919 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343626

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,407,421 - 65,436,793 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343627

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,402,185 - 65,427,615 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343628

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,415,982 - 65,436,800 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343629

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,415,980 - 65,436,780 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343630

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,407,421 - 65,427,619 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343631

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,385,649 - 65,402,482 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343632

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,385,653 - 65,402,486 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343633

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,385,653 - 65,402,482 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343634

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,385,653 - 65,402,479 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343635

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,385,649 - 65,402,458 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343636

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,387,248 - 65,402,486 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343637

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,387,432 - 65,402,482 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343638

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,387,435 - 65,402,475 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343639

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,387,432 - 65,402,444 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343640

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,423,832 - 65,436,833 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343641

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,423,987 - 65,436,739 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343642

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,423,855 - 65,435,669 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343643

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,018 - 65,402,493 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343644

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,030 - 65,402,486 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343645

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,101 - 65,402,486 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343646

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,101 - 65,402,482 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343647

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,126 - 65,402,482 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343648

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,417,582 - 65,427,632 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343649

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,392,441 - 65,402,489 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343650

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,392,446 - 65,402,489 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343651

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,417,582 - 65,427,615 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343652

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,417,582 - 65,427,587 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343653

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,387,242 - 65,391,927 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343654

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,387,246 - 65,391,930 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343655

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,387,250 - 65,391,930 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343656

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,423,858 - 65,427,681 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343657

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,423,989 - 65,427,640 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343658

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,423,992 - 65,427,639 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343659

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,424,004 - 65,427,645 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343660

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,423,997 - 65,427,616 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343661

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,400,938 - 65,402,489 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343662

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,423,997 - 65,425,319 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343663

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,436 - 65,402,521 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343664

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,436 - 65,402,491 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343665

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,437 - 65,402,491 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343666

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,401,437 - 65,402,482 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000343667

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	65,391,126 - 65,391,895 (-)	Ensembl

RefSeq Acc Id:

NR_027955

RefSeq Status:

PREDICTED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	65,434,904 - 65,436,835 (-)	NCBI
GRCm38	3	65,527,483 - 65,529,414 (-)	ENTREZGENE
MGSCv37	3	65,331,405 - 65,333,336 (-)	RGD
Celera	3	65,662,679 - 65,664,613 (-)	RGD
cM Map	3		ENTREZGENE

Sequence:

show sequence

GTGACGCCCCGGTCGTCTGGCACCACGAGCTGGTCACACCTTCCATGGAAACCGCCGGCTCCAA
ACAGCCAAGGAGTGAGACGCCCGGGTCCGAGCGACGCCTCCTGCCGGCCGCGCTCCGCGCAGCC
ACGACCTCCCGCCGCGCCCGTTCCACCGGGCTCCGCACTTCGCCGAGAGGGACCCGACCTCCCC
GCCTCCCCGAAGCCACTCAAGGCGAGTCCACAATGAATTCCCCCCCACCCCGGCCCTGCCTCCT
TCCCGAGGACCGGCTGGCGAGTCCCGGAGCTTGCAGGGCCGAGCCGCAGCGGACACTCCGGGTG
GCGGGGAAAAGGAAGGGGAACCGGTGCGGCACTCAAAGTTAACTCGAACACAGCCTGCAAACTT
CTGGGCTGCAGCCCGGAACGCGCGCCGGCCGGAACGCTCCCGCAGCGCCGAGCCCTCCCGCAGG
GGCTGCCCCGGCTGCAACCCCCCGAGAGGAGTCGCGGGCGGCCCCGCAAGCCCTGCGGCGCCAG
TCCATCTATCCACCTGCCCAGCTCCCGGCGCTGAACCCGATCCCACCCCGCCACCGACGGACGC
GAGCGCATTCAGCTCTCCCGGGCAGTCTAGGGATCCGCCGCTGTCCCGACGGGGACTCGGGGCG
GCGAGGCTGGCGCCCGCCATCCCGCTGGGGGTCCCTCCGCCGCTCGCTGCCCACCCCCCAGCCC
CTTTTACCTCAGGCAAGCCGCCCTTCGAACGCAGCCCAGGCGCGGCGTGGAGGGCCGCCTCTGC
GCCAGCGGTCCGAGCCGAGGACGAGGGCCGGTGTCTAGGGGTCGTGGGCGGCCGACGCGGCGAG
CGGCGCGCGGGCCATTCCGCGGACCTGAGCGCTGAAAGCCGCAACTGCTCTCGAGGCTCCAGCT
CGCTCGCCTGTCAGCTCCAGCTCTGCTTTAAGTGGCTTCCGGTCTCCTCCCCCGGGCCGGCTCG
TCTTCGGGGAGGGAGGAGCTTCGGGGCCGAGAGGGGGTGGGGTGGGGTGAGGGGGCCGGGCGAT
CAGTGAGTGCCGGGAAGCTGGGGCCCCGCCTCCCGTGCGCGTGCTCCGGACGGAGGGGCGCGCG
GCGGCTCGGCGCTCCGGGGAGGAGGAGGAGGAGGGAGGGGAGTGTCCGCTCGCGAGCGGCCGAG
GGTCCCCGAGGCTCTGACGGTTCGCGAGGCCGGGGAGGCTACCTCCCACCCCCCGTGAGCCTGC
GAGGAGAGGAGGCGCGCGCCGCGTGGGGCGGACTCCACCTGCCTGCGGACAGATGCAGGGTCAC
CGTGTTCCGCGGACACCCGGGCACGCGATGTGAGAGAGGCTGTGAGACGGAACGGCCGGTTTCG
GTGCGGTTGCCTTTGTTTATCTGCCTCCTTTCAAGACGCCTCCAGATCCCGAGGGGGAAGCGAG
TGGCCGCCTCCGCCGCTGCCTCCAGACGGGGTCGCCGGCCCCGCGCCGTACGGGCGGGAAGGCT
GAGCCCGCCCCGCCGCCTGTTCCCGGACAGCCTCCGCTAGGGGAAGCCAATGTTAGGGTTTTGA
CAATAGAGATGCCTATGCGCGTGTTTTGCAGCCCACGGATCACGTAGTGACTAATTCATTTAAC
AAGTCAGAGCGCCTCTTCCGCGCCGAGCGTGTACTAGGTTTAGAACTACGACCTTCATCACCCA
GACCCCACGCCCTGCACTCATAGAGACTTAGGGAACCGAGAGTTAACCTCAAAAATATACATGA
AACTGGCATCTGGATTGTAACTTCATGTATTCAATAGCTTTTTGTTGTTGTTGTTTTTTTAGTT
GGAAATAAACATTAAATTTGTATAATCCGAATTTAAGAAAAAAAATTAAAAGATCGTACTTATT
CAAAA

hide sequence

Protein Sequences


GenBank Protein	BAE41596	(Get FASTA)	NCBI Sequence Viewer

Promoters

RGD ID:

6833375

Promoter ID:

MM_KWN:34512

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Kidney, Lung

Transcripts:

NR_027955_4931440P22RIK, UC008PKQ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	3	65,333,101 - 65,334,197 (-)	MPROMDB

RGD ID:

6880806

Promoter ID:

EPDNEW_M3854

Type:

single initiation site

Name:

AK161073_1

Description:

n/a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	65,528,215 - 65,528,275	EPDNEW

RGD ID:

6880810

Promoter ID:

EPDNEW_M3856

Type:

initiation region

Name:

4931440P22Rik_1

Description:

Mus musculus RIKEN cDNA 4931440P22 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	65,529,327 - 65,529,387	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000074580	Ensembl
	ENSMUSG00000121725	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000099076	ENTREZGENE
MGD	MGI:1918254	ENTREZGENE
NCBI Gene	71004	ENTREZGENE
PhenoGen	4931440P22Rik	PhenoGen
RNAcentral	URS000075C130	RNACentral
UniProt	Q3TDK5_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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