Gm9496 (predicted gene 9496) - Rat Genome Database

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Gene: Gm9496 (predicted gene 9496) Mus musculus
Analyze
Symbol: Gm9496
Name: predicted gene 9496
RGD ID: 2310115
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 670603
Related Functional Gene: Mier3  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39146,010,342 - 46,016,135 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl146,010,342 - 46,016,135 (+)EnsemblGRCm39 Ensembl
GRCm38145,971,182 - 45,976,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,971,182 - 45,976,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv37146,028,027 - 46,033,820 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,022,979 - 46,033,890 (+)NCBIMGSCv36mm8
Celera146,315,530 - 49,375,401 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm9496
267 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12050090Shm1_msperm head morphology 1 (mouse)14418690450816935Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
10412179Habiir1_mhyperoxic acute lung injury imprinted region 1 (mouse)Not determined14541777351964119Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse

Markers in Region
AU014756  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38147,191,007 - 47,191,086UniSTSGRCm38
MGSCv37147,247,852 - 47,247,931UniSTSGRCm37
Celera147,524,848 - 47,524,927UniSTS
Cytogenetic Map1C1.1UniSTS
Whitehead/MRC_RH1766.58UniSTS
33.MMHAP34FRC12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38146,228,571 - 46,228,742UniSTSGRCm38
GRCm38153,510,671 - 53,510,858UniSTSGRCm38
MGSCv37153,567,515 - 53,567,702UniSTSGRCm37
MGSCv37146,285,416 - 46,285,587UniSTSGRCm37
Celera154,050,192 - 54,050,379UniSTS
Celera146,569,580 - 46,569,751UniSTS
Cytogenetic Map1C1.1UniSTS
Whitehead_YAC1 UniSTS
MHAa85h2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38146,457,445 - 46,457,643UniSTSGRCm38
MGSCv37146,514,290 - 46,514,488UniSTSGRCm37
Celera146,802,345 - 46,802,543UniSTS
Cytogenetic Map1C1.1UniSTS
Whitehead_YAC1 UniSTS
D1Mit175  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38148,583,041 - 48,583,174UniSTSGRCm38
MGSCv37148,639,885 - 48,640,018UniSTSGRCm37
Celera148,878,205 - 48,878,338UniSTS
Cytogenetic Map1C1.1UniSTS
cM Map126.2UniSTS
Whitehead Genetic125.1UniSTS
Whitehead_YAC1 UniSTS
RH143016  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38146,809,774 - 46,809,884UniSTSGRCm38
MGSCv37146,866,619 - 46,866,729UniSTSGRCm37
Celera147,147,546 - 47,147,656UniSTS
Cytogenetic Map1C1.1UniSTS
UniSTS:234124  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38146,808,426 - 46,808,736UniSTSGRCm38
MGSCv37146,865,271 - 46,865,581UniSTSGRCm37
Celera147,146,198 - 47,146,508UniSTS
Cytogenetic Map1C1.1UniSTS
UniSTS:224295  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38148,304,209 - 48,304,359UniSTSGRCm38
MGSCv37148,361,053 - 48,361,203UniSTSGRCm37
Celera148,618,345 - 48,618,495UniSTS
Cytogenetic Map1C1.1UniSTS
UniSTS:225013  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38147,492,336 - 47,492,501UniSTSGRCm38
MGSCv37147,549,180 - 47,549,345UniSTSGRCm37
Celera147,825,476 - 47,825,641UniSTS
Cytogenetic Map1C1.1UniSTS
UniSTS:225287  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38147,931,452 - 47,931,613UniSTSGRCm38
MGSCv37147,988,296 - 47,988,457UniSTSGRCm37
Celera148,260,849 - 48,261,010UniSTS
Cytogenetic Map1C1.1UniSTS
MARC_3283-3284:991936961:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38147,657,716 - 47,657,896UniSTSGRCm38
MGSCv37147,714,560 - 47,714,740UniSTSGRCm37
Celera147,986,393 - 47,986,573UniSTS
Cytogenetic Map1C1.1UniSTS
Slc39a10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38146,808,331 - 46,808,874UniSTSGRCm38
MGSCv37146,865,176 - 46,865,719UniSTSGRCm37
Celera147,146,103 - 47,146,646UniSTS
Cytogenetic Map1C1.1UniSTS
cM Map1 UniSTS
293E15-T7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381151,315,542 - 51,315,964UniSTSGRCm38
GRCm38147,500,177 - 47,501,777UniSTSGRCm38
MGSCv371151,129,044 - 51,129,466UniSTSGRCm37
MGSCv37147,557,021 - 47,558,621UniSTSGRCm37
Celera147,833,319 - 47,834,927UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map17 UniSTS
ha2505  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38147,994,336 - 47,995,973UniSTSGRCm38
MGSCv37148,051,180 - 48,052,817UniSTSGRCm37
Celera148,323,549 - 48,325,186UniSTS
Cytogenetic Map1C1.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000191295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl146,010,342 - 46,016,135 (+)Ensembl
GRCm38.p6 Ensembl145,971,182 - 45,976,975 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099946 Ensembl, ENTREZGENE
MGD MGI:3779906 ENTREZGENE
NCBI Gene 670603 ENTREZGENE
PhenoGen Gm9496 PhenoGen