Gm3973 (predicted gene 3973) - Rat Genome Database

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Gene: Gm3973 (predicted gene 3973) Mus musculus
Analyze
No known orthologs.
Symbol: Gm3973 (Ensembl: Gm6943)
Name: predicted gene 3973 (Ensembl:predicted gene 6943)
RGD ID: 2310089
MGI Page MGI
Description:
Type: protein-coding (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: MODEL
Previously known as: 100042698; EG627871; EG629055; Gm29738; Gm6802; Gm6943; hippocalcin-like protein 1; predicted gene 6943; predicted gene, 29738; uncharacterized protein LOC100042698; zinc finger protein 431-like; zinc finger protein 442; zinc finger protein 442-like; zinc finger protein 69-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391219,540,221 - 19,614,158 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1219,575,994 - 19,613,095 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1219,575,994 - 19,613,095 (+)NCBIGRCm39 Ensembl
GRCm381219,490,220 - 19,526,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1219,525,993 - 19,563,094 (+)NCBIGRCm38mm10GRCm38
MGSCv371219,531,848 - 19,539,552 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361219,531,848 - 19,537,163 (+)NCBIMGSCv36mm8
Celera1220,599,125 - 20,605,471 (+)NCBICelera
Cytogenetic Map12A1.2NCBI
cM Map128.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  


Genomics

Variants

.
Variants in Gm3973
1247 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12792982Fbmd4_mfemoral bone mineral density 4, females only (mouse)121004319424365136Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000222009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1219,575,994 - 19,613,095 (+)Ensembl
RefSeq Acc Id: XM_011243936   ⟹   XP_011242238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,540,221 - 19,554,931 (+)NCBI
GRCm381219,490,220 - 19,504,930 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243937   ⟹   XP_011242239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,540,221 - 19,549,282 (+)NCBI
GRCm381219,490,220 - 19,499,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243938   ⟹   XP_011242240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,540,221 - 19,557,694 (+)NCBI
GRCm381219,490,220 - 19,505,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157742   ⟹   XP_036013635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,547,496 - 19,604,843 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937716
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,540,221 - 19,614,158 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937717
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,540,221 - 19,604,078 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937718
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,540,221 - 19,604,078 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_011242238 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242239 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242240 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013635 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_011242240   ⟸   XM_011243938
- Peptide Label: isoform X4
- UniProtKB: Q9CYR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242238   ⟸   XM_011243936
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011242239   ⟸   XM_011243937
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_036013635   ⟸   XM_036157742
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:5588897 AgrOrtholog
Ensembl Genes ENSMUSG00000114140 Ensembl
MGD MGI:3800304 ENTREZGENE
NCBI Gene 100042698 ENTREZGENE
PhenoGen Gm3973 PhenoGen
UniProt Q9CYR1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-01-19 Gm3973  predicted gene 3973  Gm29738  predicted gene, 29738  Data merged from RGD:9620001 737654 PROVISIONAL
2023-01-19 Gm3973  predicted gene 3973  Gm6943  predicted gene 6943  Data merged from RGD:2295831 737654 PROVISIONAL