Gm2959 (predicted gene 2959) - Rat Genome Database

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Gene: Gm2959 (predicted gene 2959) Mus musculus
Analyze
Symbol: Gm2959 (Ensembl: Gm8011)
Name: predicted gene 2959 (Ensembl:predicted gene 8011)
RGD ID: 2309672
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 100040771; uncharacterized protein Gm2959
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391442,235,583 - 42,304,928 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1442,285,838 - 42,294,079 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1442,233,408 - 42,236,483 (+)EnsemblGRCm39 Ensembl
GRCm381442,413,626 - 42,482,971 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1442,411,451 - 42,414,526 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1442,463,881 - 42,472,122 (+)EnsemblGRCm38mm10GRCm38
MGSCv371442,990,260 - 42,992,500 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361442,990,260 - 43,005,200 (+)NCBIMGSCv36mm8
Cytogenetic Map14BNCBI
cM Map1422.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm2959
285 total Variants

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:90
Interacting mature miRNAs:93
Transcripts:ENSMUST00000169844
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse

1 to 10 of 22 rows






Ensembl Acc Id: ENSMUST00000169844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1442,233,408 - 42,236,483 (+)Ensembl
GRCm38.p6 Ensembl1442,411,451 - 42,414,526 (+)Ensembl
Ensembl Acc Id: ENSMUST00000172163   ⟹   ENSMUSP00000128769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1442,285,838 - 42,294,079 (+)Ensembl
GRCm38.p6 Ensembl1442,463,881 - 42,472,122 (+)Ensembl
RefSeq Acc Id: XM_017316255   ⟹   XP_017171744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,285,840 - 42,293,579 (+)NCBI
GRCm381442,463,883 - 42,471,622 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248243   ⟹   XP_030104103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,285,840 - 42,293,038 (+)NCBI
GRCm381442,463,883 - 42,471,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159000   ⟹   XP_036014893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,283,260 - 42,293,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159001   ⟹   XP_036014894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,283,260 - 42,293,038 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781235
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,235,583 - 42,304,928 (+)NCBI
GRCm381442,413,626 - 42,482,971 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781236
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,235,583 - 42,244,546 (+)NCBI
GRCm381442,413,626 - 42,422,589 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781237
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,235,583 - 42,292,996 (+)NCBI
GRCm381442,413,626 - 42,471,039 (+)NCBI
Sequence:
Protein RefSeqs XP_017171744 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104103 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014893 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014894 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000128769
RefSeq Acc Id: XP_017171744   ⟸   XM_017316255
- Peptide Label: isoform X1
- UniProtKB: A0AA74KT87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104103   ⟸   XM_030248243
- Peptide Label: isoform X2
- UniProtKB: K7N6Y5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000128769   ⟸   ENSMUST00000172163
RefSeq Acc Id: XP_036014893   ⟸   XM_036159000
- Peptide Label: isoform X3
- UniProtKB: A0AA74KT87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036014894   ⟸   XM_036159001
- Peptide Label: isoform X4
- UniProtKB: E9PZI8 (UniProtKB/TrEMBL),   E9Q763 (UniProtKB/TrEMBL)



1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000090731 Ensembl
  ENSMUSG00000094954 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000172163 ENTREZGENE
MGD MGI:3781137 ENTREZGENE
NCBI Gene 100040771 ENTREZGENE
PhenoGen Gm2959 PhenoGen
UniProt A0AA74KT87 ENTREZGENE
  E9PZI8 ENTREZGENE
  E9Q763 ENTREZGENE
  K7N6Y5 ENTREZGENE
1 to 10 of 10 rows