Gm15056 (predicted gene 15056) - Rat Genome Database

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Gene: Gm15056 (predicted gene 15056) Mus musculus
Analyze
No known orthologs.
Symbol: Gm15056
Name: predicted gene 15056
RGD ID: 2306398
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta-defensin 52; Defb52; defensin beta 52; OTTMUSG00000018888; uncharacterized protein LOC100504014
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39821,390,622 - 21,392,472 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl821,390,622 - 21,392,643 (-)EnsemblGRCm39 Ensembl
GRCm38820,900,606 - 20,902,456 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl820,900,606 - 20,902,627 (-)EnsemblGRCm38mm10GRCm38
MGSCv36822,040,297 - 22,041,664NCBIMGSCv36mm8
Celera822,121,922 - 22,123,289 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map810.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16033865   PMID:20003482  


Genomics

Variants

.
Variants in Gm15056
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:111
Interacting mature miRNAs:112
Transcripts:ENSMUST00000122025, ENSMUST00000167686
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357525Pnhdlc3_mplasma non-HDL cholesterol 3 (mouse)Not determined8721249923753815Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81656937350569697Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81550657249506729Mouse
11532713Sluc42_msusceptibility to lung cancer 42 (mouse)81344721035321225Mouse
4142199Poats1_mpost-ovarectomy adrenal tumor susceptibility 1 (mouse)Not determined1708262628849467Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81945501853455150Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8721249935110107Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8810320142103372Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81550657249506729Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124751082Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8798418941984342Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8810320142103372Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8495000035067154Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8810320142103372Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81945501853455150Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81832109752321225Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000122025   ⟹   ENSMUSP00000119300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl821,390,622 - 21,392,643 (-)Ensembl
GRCm38.p6 Ensembl820,900,606 - 20,902,627 (-)Ensembl
Ensembl Acc Id: ENSMUST00000167686   ⟹   ENSMUSP00000131853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl821,390,622 - 21,390,971 (-)Ensembl
GRCm38.p6 Ensembl820,900,606 - 20,901,973 (-)Ensembl
RefSeq Acc Id: NM_001177471   ⟹   NP_001170942
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39821,390,622 - 21,392,472 (-)NCBI
GRCm38820,900,606 - 20,902,456 (-)NCBI
MGSCv37822,040,297 - 22,041,664 (-)RGD
Celera822,121,922 - 22,123,289 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011242103   ⟹   XP_011240405
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39821,390,622 - 21,392,000 (-)NCBI
GRCm38820,900,606 - 20,901,984 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001170942 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240405 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAY59785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000119300
  ENSMUSP00000119300.3
RefSeq Acc Id: NP_001170942   ⟸   NM_001177471
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: XP_011240405   ⟸   XM_011242103
- Peptide Label: isoform X1
- UniProtKB: E9Q8Z3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000131853   ⟸   ENSMUST00000167686
Ensembl Acc Id: ENSMUSP00000119300   ⟸   ENSMUST00000122025

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F6ZR08-F1-model_v2 AlphaFold F6ZR08 1-88 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3705859 AgrOrtholog
Ensembl Genes ENSMUSG00000082976 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000122025 ENTREZGENE
  ENSMUST00000122025.9 UniProtKB/TrEMBL
MGD MGI:3705859 ENTREZGENE
NCBI Gene Gm15056 ENTREZGENE
PhenoGen Gm15056 PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt E9Q8Z3 ENTREZGENE, UniProtKB/TrEMBL
  Q30KM5_MOUSE UniProtKB/TrEMBL