Gm2673 (predicted gene 2673) - Rat Genome Database

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Gene: Gm2673 (predicted gene 2673) Mus musculus
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Symbol: Gm2673
Name: predicted gene 2673
RGD ID: 2306376
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 100040228
Related Functional Gene: Cwf19l1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,511,762 - 92,513,360 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,511,763 - 92,513,370 (+)EnsemblGRCm39 Ensembl
GRCm38592,363,903 - 92,365,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,363,904 - 92,365,511 (+)EnsemblGRCm38mm10GRCm38
MGSCv37592,792,929 - 92,794,527 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36592,792,810 - 92,794,514 (+)NCBIMGSCv36mm8
Celera590,507,556 - 90,509,152 (+)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm2673
148 total Variants

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:185
Interacting mature miRNAs:196
Transcripts:ENSMUST00000120958
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 56 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 56 rows





RefSeq Transcripts NG_018741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000120958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,511,763 - 92,513,370 (+)Ensembl
GRCm38.p6 Ensembl592,363,904 - 92,365,511 (+)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000082068 Ensembl, ENTREZGENE
MGD MGI:3780842 ENTREZGENE
NCBI Gene 100040228 ENTREZGENE
PhenoGen Gm2673 PhenoGen