RPL5P5 (ribosomal protein L5 pseudogene 5) - Rat Genome Database

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Gene: RPL5P5 (ribosomal protein L5 pseudogene 5) Homo sapiens
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Symbol: RPL5P5
Name: ribosomal protein L5 pseudogene 5
RGD ID: 2305678
HGNC Page HGNC:35564
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL5_1_139
Related Functional Gene: RPL5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,226,747 - 185,227,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,226,808 - 185,227,700 (-)EnsemblGRCh38hg38GRCh38
GRCh371185,195,879 - 185,196,904 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361183,462,546 - 183,463,508 (-)NCBINCBI36Build 36hg18NCBI36
Celera1158,306,575 - 158,307,604 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1156,431,244 - 156,432,269 (-)NCBIHuRef
CHM1_11186,617,585 - 186,618,610 (-)NCBICHM1_1
T2T-CHM13v2.01184,583,651 - 184,584,676 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:19123937  



.

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:50
Interacting mature miRNAs:50
Transcripts:ENST00000392009
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1016 1855 2260 1686 3203 1224 1613 1 342 1152 208 1754 5001 4749 8 2332 626 1299 1178 135


RefSeq Transcripts NG_009600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL356273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000392009
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,226,808 - 185,227,700 (-)Ensembl


Database
Acc Id
Source(s)
COSMIC RPL5P5 COSMIC
Ensembl Genes ENSG00000213051 Ensembl, ENTREZGENE
GTEx ENSG00000213051 GTEx
HGNC ID HGNC:35564 ENTREZGENE
Human Proteome Map RPL5P5 Human Proteome Map
NCBI Gene 730213 ENTREZGENE