RPL7AP64 (ribosomal protein L7a pseudogene 64) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: RPL7AP64 (ribosomal protein L7a pseudogene 64) Homo sapiens
Analyze
Symbol: RPL7AP64
Name: ribosomal protein L7a pseudogene 64
RGD ID: 2305461
HGNC Page HGNC:35821
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL7A_29_1509
Related Functional Gene: RPL7A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,140,945 - 7,141,592 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,140,930 - 7,141,592 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,044,264 - 7,044,911 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,981,735 - 6,987,242NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map17p13.1NCBI
HuRef176,937,560 - 6,938,207 (+)NCBIHuRef
CHM1_1177,053,029 - 7,053,676 (+)NCBICHM1_1
T2T-CHM13v2.0177,041,872 - 7,042,519 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:110
Interacting mature miRNAs:110
Transcripts:ENST00000483947
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
971 1626 1768 1196 3424 1220 1757 3 385 1310 241 1940 4304 4214 23 2314 583 1060 1324 149

Sequence


Ensembl Acc Id: ENST00000483947
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,140,930 - 7,141,592 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL7AP64 COSMIC
Ensembl Genes ENSG00000213876 Ensembl, ENTREZGENE
GTEx ENSG00000213876 GTEx
HGNC ID HGNC:35821 ENTREZGENE
Human Proteome Map RPL7AP64 Human Proteome Map
NCBI Gene 728486 ENTREZGENE