RPL35AP15 (ribosomal protein L35a pseudogene 15) - Rat Genome Database

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Gene: RPL35AP15 (ribosomal protein L35a pseudogene 15) Homo sapiens
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Symbol: RPL35AP15
Name: ribosomal protein L35a pseudogene 15
RGD ID: 2304827
HGNC Page HGNC:36974
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL35A_6_605
Related Functional Gene: RPL35A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385117,301,107 - 117,301,442 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5117,301,104 - 117,301,442 (-)EnsemblGRCh38hg38GRCh38
GRCh375116,636,803 - 116,637,138 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365116,636,803 - 116,637,138 (-)NCBINCBI36Build 36hg18NCBI36
Celera5112,586,080 - 112,586,415 (-)NCBICelera
Cytogenetic Map5q23.1NCBI
HuRef5111,818,012 - 111,818,347 (-)NCBIHuRef
CHM1_15116,069,410 - 116,069,745 (-)NCBICHM1_1
T2T-CHM13v2.05117,813,765 - 117,814,100 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:19123937  



.

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENST00000468042
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407384792GWAS1033768_Hwhite matter microstructure measurement QTL GWAS1033768 (human)2e-12white matter microstructure measurement5117301442117301443Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
1 186 24 20 544 6 17 2 32 1 49 88 64 504 18 252 16 1


RefSeq Transcripts NG_011098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000468042
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5117,301,104 - 117,301,442 (-)Ensembl


Database
Acc Id
Source(s)
COSMIC RPL35AP15 COSMIC
Ensembl Genes ENSG00000243758 Ensembl, ENTREZGENE
GTEx ENSG00000243758 GTEx
HGNC ID HGNC:36974 ENTREZGENE
Human Proteome Map RPL35AP15 Human Proteome Map
NCBI Gene 100271317 ENTREZGENE