Snora2b (small nucleolar RNA, H/ACA box 2B) - Rat Genome Database

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Gene: Snora2b (small nucleolar RNA, H/ACA box 2B) Mus musculus
Analyze
Symbol: Snora2b
Name: small nucleolar RNA, H/ACA box 2B
RGD ID: 2302634
MGI Page MGI
Description: INTERACTS WITH titanium dioxide; cadmium dichloride (ortholog); doxorubicin (ortholog)
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: MBI-13; MBI-137
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,424,229 - 98,424,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,424,227 - 98,424,363 (-)EnsemblGRCm39 Ensembl
GRCm381598,526,348 - 98,526,459 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,526,346 - 98,526,482 (-)EnsemblGRCm38mm10GRCm38
Celera15100,673,884 - 100,673,995 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11387227   PMID:11424213  


Genomics

Comparative Map Data
Snora2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,424,229 - 98,424,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,424,227 - 98,424,363 (-)EnsemblGRCm39 Ensembl
GRCm381598,526,348 - 98,526,459 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,526,346 - 98,526,482 (-)EnsemblGRCm38mm10GRCm38
Celera15100,673,884 - 100,673,995 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.53NCBI
SNORA2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,667,457 - 48,667,593 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,667,457 - 48,667,593 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,061,240 - 49,061,376 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,347,507 - 47,347,643 (-)NCBINCBI36Build 36hg18NCBI36
Celera1247,857,223 - 47,857,359 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1246,095,299 - 46,095,435 (-)NCBIHuRef
CHM1_11249,027,055 - 49,027,191 (-)NCBICHM1_1
T2T-CHM13v2.01248,629,482 - 48,629,618 (-)NCBIT2T-CHM13v2.0
Snora2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,555,365 - 131,555,501 (-)NCBIGRCr8
mRatBN7.27129,676,333 - 129,676,469 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,676,333 - 129,676,469 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map7q36NCBI
LOC119866494
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2740,423,925 - 40,424,061 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,885,057 - 5,885,193 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,885,057 - 5,885,193 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,848,299 - 5,848,435 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,838,831 - 5,838,967 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02740,815,874 - 40,816,010 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snora2b
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:136
Count of miRNA genes:130
Interacting mature miRNAs:135
Transcripts:ENSMUST00000084005
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597884933102896555Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597697881103008427Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse

Markers in Region
RH124264  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381598,527,124 - 98,527,211UniSTSGRCm38
MGSCv371598,357,555 - 98,357,642UniSTSGRCm37
Celera15100,674,660 - 100,674,747UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map15F2UniSTS
UniSTS:237391  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381598,526,074 - 98,526,281UniSTSGRCm38
MGSCv371598,356,505 - 98,356,712UniSTSGRCm37
Celera15100,673,610 - 100,673,817UniSTS
Cytogenetic Map15F2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000084005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1598,424,227 - 98,424,363 (-)Ensembl
GRCm38.p6 Ensembl1598,526,346 - 98,526,482 (-)Ensembl
RefSeq Acc Id: NR_034052
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391598,424,229 - 98,424,340 (-)NCBI
GRCm381598,526,348 - 98,526,459 (-)ENTREZGENE
Celera15100,673,884 - 100,673,995 (-)ENTREZGENE
cM Map15 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065939 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000084005 ENTREZGENE
MGD MGI:3819497 ENTREZGENE
NCBI Gene 100217416 ENTREZGENE
PhenoGen Snora2b PhenoGen
RNAcentral URS0000463B47 RNACentral