Gm15710 (predicted gene 15710) - Rat Genome Database

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Gene: Gm15710 (predicted gene 15710) Mus musculus
Analyze
No known orthologs.
Symbol: Gm15710
Name: predicted gene 15710
RGD ID: 2299504
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000078192; predicted gene, OTTMUSG00000025606
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rpl13  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,288,097 - 92,288,828 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,288,153 - 92,288,788 (-)EnsemblGRCm39 Ensembl
GRCm38592,140,238 - 92,140,969 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,140,294 - 92,140,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,569,256 - 92,569,955 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36592,569,248 - 92,569,997 (-)NCBIMGSCv36mm8
Celera590,283,740 - 90,284,449 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm15710
5 total Variants

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:43
Interacting mature miRNAs:44
Transcripts:ENSMUST00000121821, ENSMUST00000170136
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 57 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 57 rows






Ensembl Acc Id: ENSMUST00000121821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl592,288,153 - 92,288,788 (-)Ensembl
GRCm38.p6 Ensembl592,140,294 - 92,140,929 (-)Ensembl
RefSeq Acc Id: XM_001475096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37592,569,256 - 92,569,955 (-)RGD
RefSeq Acc Id: XM_003086450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera590,283,740 - 90,284,449 (-)RGD


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000084111 Ensembl, ENTREZGENE
MGD MGI:3783151 ENTREZGENE
NCBI Gene 100040605 ENTREZGENE
PhenoGen Gm15710 PhenoGen